Hb_010672_060

Information

Type -
Description -
Location Contig10672: 44429-47064
Sequence    

Annotation

kegg
ID rcu:RCOM_1302500
description gaba(A) receptor-associated protein, putative
nr
ID XP_002529904.1
description gaba(A) receptor-associated protein, putative [Ricinus communis]
swissprot
ID Q8S927
description Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1
trembl
ID B9SV85
description Autophagy-related protein OS=Ricinus communis GN=RCOM_1302500 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02081: 37910-43545 , PASA_asmbl_02083: 44445-47116 , PASA_asmbl_02084: 44445-45385
cDNA
(Sanger)
(ID:Location)		 004_B04.ab1: 44552-46934 , 025_O20.ab1: 46921-47026 , 028_O13.ab1: 44552-46934 , 031_B09.ab1: 44552-46934 , 031_F08.ab1: 44552-46934 , 036_A17.ab1: 46921-47026 , 050_B14.ab1: 44569-46933

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010672_060 0.0 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
2 Hb_002431_050 0.0366079366 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
3 Hb_005063_050 0.0602661632 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
4 Hb_000699_160 0.0627397274 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
5 Hb_003893_050 0.0630182366 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
6 Hb_000111_340 0.0661899674 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
7 Hb_007416_020 0.0724882852 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
8 Hb_002588_010 0.073744146 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
9 Hb_000283_110 0.0739841036 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
10 Hb_002830_020 0.0758490801 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_003226_210 0.0762982852 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
12 Hb_001633_030 0.0764320255 - - -
13 Hb_143496_010 0.0765687154 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
14 Hb_000334_210 0.0766739196 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
15 Hb_003656_070 0.0767576065 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
16 Hb_007304_070 0.0788988911 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
17 Hb_007944_040 0.0799770491 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
18 Hb_003683_110 0.0802822246 - - JHL10I11.3 [Jatropha curcas]
19 Hb_003125_150 0.0805535659 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
20 Hb_001221_310 0.0806637704 - - sec61 gamma subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_010672_060 Hb_010672_060 Hb_002431_050 Hb_002431_050 Hb_010672_060--Hb_002431_050 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_003893_050 Hb_003893_050 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_007416_020 Hb_007416_020 Hb_010672_060--Hb_007416_020 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_002431_050--Hb_007416_020 Hb_029584_060 Hb_029584_060 Hb_002431_050--Hb_029584_060 Hb_005063_050--Hb_003893_050 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_000699_160--Hb_002830_020 Hb_003893_050--Hb_000283_110 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_007944_040 Hb_007944_040 Hb_000111_340--Hb_007944_040 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_002588_010 Hb_002588_010 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070 Hb_001080_080 Hb_001080_080 Hb_007416_020--Hb_001080_080 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_007416_020--Hb_029584_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.696 19.8407 29.1585 41.9072 40.1423 40.1881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.053 174.15 68.2571 25.7086 24.4415

CAGE analysis