Hb_005568_120

Information

Type -
Description -
Location Contig5568: 122453-127655
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20010g
description POPTRDRAFT_565256; hypothetical protein
nr
ID BAH10646.1
description Prephenate dehydratase [Hevea brasiliensis]
swissprot
ID Q9SSE7
description Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1
trembl
ID B7X943
description Prephenate dehydratase OS=Hevea brasiliensis GN=pd1 PE=2 SV=1
Gene Ontology
ID GO:0004664
description arogenate dehydratase prephenate dehydratase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48577: 122498-127698 , PASA_asmbl_48578: 122498-127698 , PASA_asmbl_48579: 122447-127698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_120 0.0 - - Prephenate dehydratase [Hevea brasiliensis]
2 Hb_028515_010 0.0431106497 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
3 Hb_002676_090 0.0646866443 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
4 Hb_011173_050 0.0657851338 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
5 Hb_004567_120 0.0669031551 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
6 Hb_012114_040 0.0675295256 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000373_130 0.0694592596 - - PREDICTED: protein FAM188A [Jatropha curcas]
8 Hb_005883_100 0.0766250452 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
9 Hb_001085_120 0.0766737856 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
10 Hb_004837_160 0.0789380783 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
11 Hb_003349_090 0.0801496192 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
12 Hb_000058_060 0.080875886 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
13 Hb_001663_050 0.0821375935 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
14 Hb_001519_050 0.0822270096 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
15 Hb_011644_030 0.0823429645 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
16 Hb_000175_060 0.0824549097 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
17 Hb_000215_060 0.084029738 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
18 Hb_033642_080 0.0852874913 - - V-type proton ATPase subunit E [Hevea brasiliensis]
19 Hb_000985_060 0.0854165654 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
20 Hb_000230_510 0.0854269783 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]

Gene co-expression network

sample Hb_005568_120 Hb_005568_120 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_000373_130 Hb_000373_130 Hb_005568_120--Hb_000373_130 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_002676_090--Hb_004567_120 Hb_004143_150 Hb_004143_150 Hb_002676_090--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_002676_090--Hb_004899_370 Hb_000107_160 Hb_000107_160 Hb_002676_090--Hb_000107_160 Hb_001545_170 Hb_001545_170 Hb_002676_090--Hb_001545_170 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_011173_050--Hb_000373_130 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_001663_050 Hb_001663_050 Hb_012114_040--Hb_001663_050 Hb_155764_010 Hb_155764_010 Hb_012114_040--Hb_155764_010 Hb_032208_060 Hb_032208_060 Hb_012114_040--Hb_032208_060 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_000373_130--Hb_004837_160 Hb_000373_130--Hb_003349_090 Hb_000373_130--Hb_001519_050 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.82033 7.40898 5.16487 9.62449 6.83702 10.8565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2904 29.2803 22.404 11.7704 7.86095

CAGE analysis