Hb_000985_060

Information

Type -
Description -
Location Contig985: 118872-121375
Sequence    

Annotation

kegg
ID rcu:RCOM_1213170
description Protein transport protein SFT2, putative
nr
ID XP_012089602.1
description PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9P6K1
description Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft2 PE=3 SV=1
trembl
ID A0A067JTX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01721 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein transport protein sft2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64627: 119020-121474
cDNA
(Sanger)
(ID:Location)		 009_J01.ab1: 119020-121243 , 014_J23.ab1: 119020-121269

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000985_060 0.0 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
2 Hb_000635_150 0.0547233121 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
3 Hb_000479_190 0.0603335929 - - conserved hypothetical protein [Ricinus communis]
4 Hb_114310_080 0.0646353099 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000363_360 0.0658254909 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
6 Hb_028515_010 0.0667669423 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
7 Hb_029388_030 0.071162251 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
8 Hb_001461_010 0.0765506462 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
9 Hb_001519_050 0.0788950377 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
10 Hb_033594_150 0.0792239876 - - unknown [Lotus japonicus]
11 Hb_002007_210 0.0813916615 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
12 Hb_003671_020 0.0827540206 - - calcineurin B, putative [Ricinus communis]
13 Hb_002005_020 0.0828441369 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003697_040 0.0847381975 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
15 Hb_005568_120 0.0854165654 - - Prephenate dehydratase [Hevea brasiliensis]
16 Hb_010174_020 0.0865906932 - - protein binding protein, putative [Ricinus communis]
17 Hb_000336_240 0.0884390486 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
18 Hb_001205_150 0.0888336176 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
19 Hb_001584_190 0.0889886316 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
20 Hb_000373_130 0.0890572359 - - PREDICTED: protein FAM188A [Jatropha curcas]

Gene co-expression network

sample Hb_000985_060 Hb_000985_060 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030 Hb_001519_050 Hb_001519_050 Hb_000635_150--Hb_001519_050 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000125_190 Hb_000125_190 Hb_000635_150--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000479_190--Hb_000363_360 Hb_114310_080--Hb_028515_010 Hb_114310_080--Hb_029388_030 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_003697_040 Hb_003697_040 Hb_000363_360--Hb_003697_040 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_003671_020 Hb_003671_020 Hb_029388_030--Hb_003671_020 Hb_033594_150 Hb_033594_150 Hb_029388_030--Hb_033594_150 Hb_029388_030--Hb_000479_190 Hb_152784_010 Hb_152784_010 Hb_029388_030--Hb_152784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67628 5.25772 4.84005 15.5641 7.2808 12.0935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.048 24.2422 22.0481 10.9789 6.40079

CAGE analysis