Hb_000479_190

Information

Type -
Description -
Location Contig479: 133058-133804
Sequence    

Annotation

kegg
ID rcu:RCOM_0524300
description hypothetical protein
nr
ID XP_002526072.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FLZ8
description EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1
trembl
ID B9SJA3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0524300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44628: 131882-136113 , PASA_asmbl_44629: 131882-136115 , PASA_asmbl_44630: 131882-136113 , PASA_asmbl_44633: 134453-135110 , PASA_asmbl_44634: 134056-134278 , PASA_asmbl_44636: 131949-133324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001584_190 0.0489121001 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
3 Hb_000985_060 0.0603335929 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
4 Hb_003502_090 0.0654725602 - - ATP synthase subunit d, putative [Ricinus communis]
5 Hb_003108_020 0.0671481344 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
6 Hb_001205_150 0.0686628231 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
7 Hb_000363_360 0.0700443223 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
8 Hb_012799_160 0.0707260126 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
9 Hb_000692_220 0.0719214058 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
10 Hb_006429_010 0.0744862037 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
11 Hb_010174_020 0.0745768179 - - protein binding protein, putative [Ricinus communis]
12 Hb_003125_010 0.075833845 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
13 Hb_003671_020 0.0773828162 - - calcineurin B, putative [Ricinus communis]
14 Hb_000656_170 0.0791376316 - - lsm1, putative [Ricinus communis]
15 Hb_002759_060 0.0798671778 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
16 Hb_001461_010 0.0806191387 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
17 Hb_000331_450 0.0814696438 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
18 Hb_092337_010 0.0825308934 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
19 Hb_000477_060 0.0836426223 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_000635_150 0.0840088401 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000479_190 Hb_000479_190 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_012799_160 Hb_012799_160 Hb_001584_190--Hb_012799_160 Hb_000331_450 Hb_000331_450 Hb_001584_190--Hb_000331_450 Hb_002759_060 Hb_002759_060 Hb_001584_190--Hb_002759_060 Hb_010042_010 Hb_010042_010 Hb_001584_190--Hb_010042_010 Hb_006846_060 Hb_006846_060 Hb_001584_190--Hb_006846_060 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030 Hb_003502_090--Hb_003108_020 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_000692_220 Hb_000692_220 Hb_001205_150--Hb_000692_220 Hb_010174_020 Hb_010174_020 Hb_001205_150--Hb_010174_020 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_003697_040 Hb_003697_040 Hb_000363_360--Hb_003697_040 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5331 14.7075 21.5699 54.4351 31.5821 53.7494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3808 74.1704 68.3635 33.9684 22.1433

CAGE analysis