Hb_012799_160

Information

Type -
Description -
Location Contig12799: 95607-97813
Sequence    

Annotation

kegg
ID pmum:103333232
description ADP-ribosylation factor-related protein 1
nr
ID XP_012090279.1
description PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
swissprot
ID Q63055
description ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1
trembl
ID A0A067JEK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26132 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-related protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08652: 95852-98881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_160 0.0 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
2 Hb_001789_070 0.0642338916 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
3 Hb_003125_010 0.0651326373 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
4 Hb_002207_110 0.0670756994 - - -
5 Hb_000529_190 0.0682448774 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
6 Hb_000479_190 0.0707260126 - - conserved hypothetical protein [Ricinus communis]
7 Hb_025240_040 0.073938111 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
8 Hb_001584_190 0.0744129201 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
9 Hb_004032_010 0.0750828192 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
10 Hb_000331_450 0.0780510602 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
11 Hb_033594_120 0.0785826483 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
12 Hb_101705_030 0.0793122544 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
13 Hb_006846_060 0.0793323909 - - inositol hexaphosphate kinase, putative [Ricinus communis]
14 Hb_000656_170 0.0823167354 - - lsm1, putative [Ricinus communis]
15 Hb_003633_030 0.0835349257 - - f-actin capping protein alpha, putative [Ricinus communis]
16 Hb_008300_010 0.0838182138 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
17 Hb_001998_230 0.0846010987 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
18 Hb_003502_090 0.0848319138 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_024714_100 0.0853119453 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
20 Hb_001234_100 0.0857975711 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012799_160 Hb_012799_160 Hb_001789_070 Hb_001789_070 Hb_012799_160--Hb_001789_070 Hb_003125_010 Hb_003125_010 Hb_012799_160--Hb_003125_010 Hb_002207_110 Hb_002207_110 Hb_012799_160--Hb_002207_110 Hb_000529_190 Hb_000529_190 Hb_012799_160--Hb_000529_190 Hb_000479_190 Hb_000479_190 Hb_012799_160--Hb_000479_190 Hb_025240_040 Hb_025240_040 Hb_012799_160--Hb_025240_040 Hb_001789_070--Hb_000529_190 Hb_001789_070--Hb_025240_040 Hb_000103_090 Hb_000103_090 Hb_001789_070--Hb_000103_090 Hb_001789_070--Hb_003125_010 Hb_002214_040 Hb_002214_040 Hb_001789_070--Hb_002214_040 Hb_001369_690 Hb_001369_690 Hb_003125_010--Hb_001369_690 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_003125_010--Hb_025240_040 Hb_004032_010 Hb_004032_010 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_031089_040 Hb_031089_040 Hb_002207_110--Hb_031089_040 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120 Hb_000529_190--Hb_002214_040 Hb_063716_050 Hb_063716_050 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000832_140 Hb_000832_140 Hb_000529_190--Hb_000832_140 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4543 4.95058 10.7445 20.1341 16.8324 26.5934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6131 32.4808 25.5629 12.3328 13.0315

CAGE analysis