Hb_004306_020

Information

Type -
Description -
Location Contig4306: 8997-12461
Sequence    

Annotation

kegg
ID rcu:RCOM_1719220
description transferase, transferring glycosyl groups, putative
nr
ID XP_012085079.1
description PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17525 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat and sam domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42168: 9019-13495 , PASA_asmbl_42169: 9035-12689 , PASA_asmbl_42170: 9018-12574
cDNA
(Sanger)
(ID:Location)		 012_J13.ab1: 9018-11534 , 017_C01.ab1: 9083-12448 , 035_G14.ab1: 9018-11556

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_020 0.0 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
2 Hb_010180_020 0.0610058314 - - hypothetical protein glysoja_030394 [Glycine soja]
3 Hb_010180_010 0.0728572483 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
4 Hb_004545_060 0.0754288029 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
5 Hb_002207_110 0.0772381007 - - -
6 Hb_000024_080 0.0793468057 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
7 Hb_005686_060 0.0794126662 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
8 Hb_006909_030 0.0805588988 - - 40S ribosomal protein S17B [Hevea brasiliensis]
9 Hb_000329_030 0.0813959603 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
10 Hb_001604_080 0.0837502195 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
11 Hb_000045_090 0.0854218904 - - PREDICTED: syntaxin-31 [Jatropha curcas]
12 Hb_004032_010 0.0867798398 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
13 Hb_007432_080 0.0868231757 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
14 Hb_000103_560 0.0870530717 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_168054_010 0.0873076484 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
16 Hb_101705_030 0.0882058487 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
17 Hb_009773_020 0.0888494058 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
18 Hb_000815_040 0.0897615215 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
19 Hb_009051_030 0.0902684118 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
20 Hb_000085_320 0.0910281986 - - Uncharacterized protein TCM_030749 [Theobroma cacao]

Gene co-expression network

sample Hb_004306_020 Hb_004306_020 Hb_010180_020 Hb_010180_020 Hb_004306_020--Hb_010180_020 Hb_010180_010 Hb_010180_010 Hb_004306_020--Hb_010180_010 Hb_004545_060 Hb_004545_060 Hb_004306_020--Hb_004545_060 Hb_002207_110 Hb_002207_110 Hb_004306_020--Hb_002207_110 Hb_000024_080 Hb_000024_080 Hb_004306_020--Hb_000024_080 Hb_005686_060 Hb_005686_060 Hb_004306_020--Hb_005686_060 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_010180_020--Hb_004545_060 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_143398_010 Hb_143398_010 Hb_010180_010--Hb_143398_010 Hb_001998_230 Hb_001998_230 Hb_010180_010--Hb_001998_230 Hb_002890_140 Hb_002890_140 Hb_010180_010--Hb_002890_140 Hb_000329_030 Hb_000329_030 Hb_010180_010--Hb_000329_030 Hb_010180_010--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_004032_010 Hb_004032_010 Hb_002207_110--Hb_004032_010 Hb_031089_040 Hb_031089_040 Hb_002207_110--Hb_031089_040 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120 Hb_000087_020 Hb_000087_020 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_004705_100 Hb_004705_100 Hb_005686_060--Hb_004705_100 Hb_005686_060--Hb_000045_090 Hb_010172_080 Hb_010172_080 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_005686_060--Hb_002078_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.8865 13.4478 21.9185 47.4598 29.512 67.9904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.5355 80.1454 46.9811 22.6984 12.5316

CAGE analysis