Hb_001998_230

Information

Type -
Description -
Location Contig1998: 256150-263465
Sequence    

Annotation

kegg
ID tcc:TCM_026982
description Coatomer epsilon subunit isoform 1
nr
ID XP_012075535.1
description PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
swissprot
ID Q9SA78
description Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1
trembl
ID A0A067KFG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09150 PE=4 SV=1
Gene Ontology
ID GO:0005622
description coatomer subunit epsilon-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20017: 256165-263387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_230 0.0 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
2 Hb_010180_010 0.0599137336 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
3 Hb_002112_040 0.0601944996 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
4 Hb_004072_020 0.0702684722 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
5 Hb_024714_100 0.0708433765 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
6 Hb_000363_500 0.0825809677 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
7 Hb_012799_160 0.0846010987 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
8 Hb_002207_110 0.0870164471 - - -
9 Hb_000529_190 0.0887049169 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
10 Hb_004545_060 0.0890910932 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
11 Hb_010180_020 0.0905127399 - - hypothetical protein glysoja_030394 [Glycine soja]
12 Hb_001699_040 0.0907972614 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
13 Hb_001789_070 0.0916754793 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
14 Hb_002616_050 0.0926429144 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
15 Hb_004128_190 0.0934097939 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
16 Hb_000365_310 0.0946283983 - - auxin:hydrogen symporter, putative [Ricinus communis]
17 Hb_004306_020 0.0952537882 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
18 Hb_000103_090 0.0959225605 - - PREDICTED: protein RDM1 [Jatropha curcas]
19 Hb_143398_010 0.0965364247 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
20 Hb_002774_060 0.098395103 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001998_230 Hb_001998_230 Hb_010180_010 Hb_010180_010 Hb_001998_230--Hb_010180_010 Hb_002112_040 Hb_002112_040 Hb_001998_230--Hb_002112_040 Hb_004072_020 Hb_004072_020 Hb_001998_230--Hb_004072_020 Hb_024714_100 Hb_024714_100 Hb_001998_230--Hb_024714_100 Hb_000363_500 Hb_000363_500 Hb_001998_230--Hb_000363_500 Hb_012799_160 Hb_012799_160 Hb_001998_230--Hb_012799_160 Hb_143398_010 Hb_143398_010 Hb_010180_010--Hb_143398_010 Hb_004306_020 Hb_004306_020 Hb_010180_010--Hb_004306_020 Hb_002890_140 Hb_002890_140 Hb_010180_010--Hb_002890_140 Hb_000329_030 Hb_000329_030 Hb_010180_010--Hb_000329_030 Hb_010180_020 Hb_010180_020 Hb_010180_010--Hb_010180_020 Hb_002112_040--Hb_000363_500 Hb_002112_040--Hb_004072_020 Hb_000676_290 Hb_000676_290 Hb_002112_040--Hb_000676_290 Hb_002616_050 Hb_002616_050 Hb_002112_040--Hb_002616_050 Hb_004128_190 Hb_004128_190 Hb_002112_040--Hb_004128_190 Hb_004072_020--Hb_002616_050 Hb_004072_020--Hb_024714_100 Hb_004072_020--Hb_000363_500 Hb_005862_010 Hb_005862_010 Hb_004072_020--Hb_005862_010 Hb_004182_040 Hb_004182_040 Hb_024714_100--Hb_004182_040 Hb_001789_070 Hb_001789_070 Hb_024714_100--Hb_001789_070 Hb_000529_190 Hb_000529_190 Hb_024714_100--Hb_000529_190 Hb_024714_100--Hb_012799_160 Hb_000363_500--Hb_002616_050 Hb_003847_080 Hb_003847_080 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040 Hb_012799_160--Hb_001789_070 Hb_003125_010 Hb_003125_010 Hb_012799_160--Hb_003125_010 Hb_002207_110 Hb_002207_110 Hb_012799_160--Hb_002207_110 Hb_012799_160--Hb_000529_190 Hb_000479_190 Hb_000479_190 Hb_012799_160--Hb_000479_190 Hb_025240_040 Hb_025240_040 Hb_012799_160--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.9132 11.2491 25.3377 71.1652 62.2299 105.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.6026 84.3618 60.7378 35.1642 30.9566

CAGE analysis