Hb_024714_100

Information

Type -
Description -
Location Contig24714: 66587-70308
Sequence    

Annotation

kegg
ID rcu:RCOM_1439870
description hypothetical protein
nr
ID XP_012082729.1
description PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
swissprot
ID Q5UR03
description Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=3 SV=1
trembl
ID A0A067JVZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13907 PE=4 SV=1
Gene Ontology
ID GO:0016706
description alkylated dna repair protein alkb homolog 8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25707: 67614-68166 , PASA_asmbl_25708: 67563-70305 , PASA_asmbl_25710: 67888-70292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_100 0.0 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
2 Hb_004072_020 0.0683198028 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
3 Hb_001998_230 0.0708433765 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
4 Hb_004182_040 0.0802390444 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
5 Hb_001789_070 0.0818262679 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
6 Hb_000529_190 0.0830850124 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
7 Hb_012799_160 0.0853119453 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
8 Hb_000284_110 0.0893221177 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
9 Hb_001935_130 0.0942454756 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
10 Hb_000056_260 0.0943581585 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
11 Hb_002616_050 0.0970828375 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
12 Hb_003633_030 0.0972965683 - - f-actin capping protein alpha, putative [Ricinus communis]
13 Hb_000365_310 0.0976154929 - - auxin:hydrogen symporter, putative [Ricinus communis]
14 Hb_003195_070 0.1009639225 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_002506_020 0.1014499606 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
16 Hb_005489_110 0.1016275951 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
17 Hb_010180_010 0.1023785122 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
18 Hb_004545_060 0.1029555828 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
19 Hb_002112_040 0.1036314049 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
20 Hb_002207_110 0.1038942772 - - -

Gene co-expression network

sample Hb_024714_100 Hb_024714_100 Hb_004072_020 Hb_004072_020 Hb_024714_100--Hb_004072_020 Hb_001998_230 Hb_001998_230 Hb_024714_100--Hb_001998_230 Hb_004182_040 Hb_004182_040 Hb_024714_100--Hb_004182_040 Hb_001789_070 Hb_001789_070 Hb_024714_100--Hb_001789_070 Hb_000529_190 Hb_000529_190 Hb_024714_100--Hb_000529_190 Hb_012799_160 Hb_012799_160 Hb_024714_100--Hb_012799_160 Hb_002616_050 Hb_002616_050 Hb_004072_020--Hb_002616_050 Hb_004072_020--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_004072_020--Hb_000363_500 Hb_002112_040 Hb_002112_040 Hb_004072_020--Hb_002112_040 Hb_005862_010 Hb_005862_010 Hb_004072_020--Hb_005862_010 Hb_010180_010 Hb_010180_010 Hb_001998_230--Hb_010180_010 Hb_001998_230--Hb_002112_040 Hb_001998_230--Hb_000363_500 Hb_001998_230--Hb_012799_160 Hb_003125_160 Hb_003125_160 Hb_004182_040--Hb_003125_160 Hb_000690_130 Hb_000690_130 Hb_004182_040--Hb_000690_130 Hb_003665_060 Hb_003665_060 Hb_004182_040--Hb_003665_060 Hb_003728_080 Hb_003728_080 Hb_004182_040--Hb_003728_080 Hb_001350_010 Hb_001350_010 Hb_004182_040--Hb_001350_010 Hb_000291_220 Hb_000291_220 Hb_004182_040--Hb_000291_220 Hb_001789_070--Hb_000529_190 Hb_001789_070--Hb_012799_160 Hb_025240_040 Hb_025240_040 Hb_001789_070--Hb_025240_040 Hb_000103_090 Hb_000103_090 Hb_001789_070--Hb_000103_090 Hb_003125_010 Hb_003125_010 Hb_001789_070--Hb_003125_010 Hb_002214_040 Hb_002214_040 Hb_001789_070--Hb_002214_040 Hb_000529_190--Hb_002214_040 Hb_063716_050 Hb_063716_050 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000832_140 Hb_000832_140 Hb_000529_190--Hb_000832_140 Hb_012799_160--Hb_003125_010 Hb_002207_110 Hb_002207_110 Hb_012799_160--Hb_002207_110 Hb_012799_160--Hb_000529_190 Hb_000479_190 Hb_000479_190 Hb_012799_160--Hb_000479_190 Hb_012799_160--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09186 1.31446 4.60573 9.1351 10.2502 15.1119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84007 11.289 10.0975 6.24754 5.78984

CAGE analysis