Hb_004072_020

Information

Type -
Description -
Location Contig4072: 55023-59660
Sequence    

Annotation

kegg
ID rcu:RCOM_1069430
description hypothetical protein
nr
ID XP_012073709.1
description PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06663 PE=3 SV=1
Gene Ontology
ID GO:0016740
description d-aminoacid aminotransferase-like plp-dependent enzymes superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40339: 55141-56264 , PASA_asmbl_40340: 55708-56094 , PASA_asmbl_40341: 56813-56976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004072_020 0.0 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
2 Hb_002616_050 0.0662425825 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
3 Hb_024714_100 0.0683198028 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
4 Hb_001998_230 0.0702684722 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
5 Hb_000363_500 0.0797115499 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
6 Hb_002112_040 0.0850775704 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
7 Hb_005862_010 0.0852804424 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
8 Hb_144598_030 0.0855814758 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
9 Hb_010180_010 0.0900178066 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
10 Hb_000023_140 0.0910670657 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
11 Hb_001789_070 0.091653137 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
12 Hb_000494_040 0.0937038175 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
13 Hb_000045_090 0.0955453366 - - PREDICTED: syntaxin-31 [Jatropha curcas]
14 Hb_000284_110 0.0957276165 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
15 Hb_143398_010 0.0971623857 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
16 Hb_001266_080 0.0980702205 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
17 Hb_000365_310 0.0987582483 - - auxin:hydrogen symporter, putative [Ricinus communis]
18 Hb_000529_190 0.1001592534 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
19 Hb_004545_060 0.10137377 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
20 Hb_148644_010 0.1016483523 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004072_020 Hb_004072_020 Hb_002616_050 Hb_002616_050 Hb_004072_020--Hb_002616_050 Hb_024714_100 Hb_024714_100 Hb_004072_020--Hb_024714_100 Hb_001998_230 Hb_001998_230 Hb_004072_020--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_004072_020--Hb_000363_500 Hb_002112_040 Hb_002112_040 Hb_004072_020--Hb_002112_040 Hb_005862_010 Hb_005862_010 Hb_004072_020--Hb_005862_010 Hb_002616_050--Hb_000363_500 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_005063_040 Hb_005063_040 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_024714_100--Hb_001998_230 Hb_004182_040 Hb_004182_040 Hb_024714_100--Hb_004182_040 Hb_001789_070 Hb_001789_070 Hb_024714_100--Hb_001789_070 Hb_000529_190 Hb_000529_190 Hb_024714_100--Hb_000529_190 Hb_012799_160 Hb_012799_160 Hb_024714_100--Hb_012799_160 Hb_010180_010 Hb_010180_010 Hb_001998_230--Hb_010180_010 Hb_001998_230--Hb_002112_040 Hb_001998_230--Hb_000363_500 Hb_001998_230--Hb_012799_160 Hb_003847_080 Hb_003847_080 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_004128_190 Hb_004128_190 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_000363_500--Hb_005063_040 Hb_002112_040--Hb_000363_500 Hb_000676_290 Hb_000676_290 Hb_002112_040--Hb_000676_290 Hb_002112_040--Hb_002616_050 Hb_002112_040--Hb_004128_190 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_144598_030 Hb_144598_030 Hb_005862_010--Hb_144598_030 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3629 0.914042 1.89423 3.58017 4.15056 8.13193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18841 4.33849 4.09357 2.21455 2.30561

CAGE analysis