Hb_004934_070

Information

Type -
Description -
Location Contig4934: 48383-50512
Sequence    

Annotation

kegg
ID rcu:RCOM_1439000
description U2 small nuclear ribonucleoprotein A, putative
nr
ID XP_012088665.1
description PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
swissprot
ID P43333
description U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2
trembl
ID A0A067JUP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23057 PE=4 SV=1
Gene Ontology
ID GO:0005730
description u2 small nuclear ribonucleoprotein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45380: 33641-50675
cDNA
(Sanger)
(ID:Location)		 022_I18.ab1: 49335-50666

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_070 0.0 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
2 Hb_005862_010 0.0788678574 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
3 Hb_000785_080 0.086314372 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
4 Hb_002374_020 0.0909542447 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
5 Hb_003641_060 0.093035358 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
6 Hb_004881_020 0.0935183375 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
7 Hb_144598_030 0.0944160114 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
8 Hb_000107_200 0.0950822505 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
9 Hb_187739_020 0.0980370449 - - PREDICTED: B2 protein [Jatropha curcas]
10 Hb_002067_120 0.0981055949 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
11 Hb_000038_080 0.1010884236 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
12 Hb_002671_100 0.1013509318 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
13 Hb_000212_240 0.1017135961 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_000031_220 0.1019765075 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
15 Hb_150360_010 0.1023939022 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
16 Hb_002271_020 0.1037526995 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
17 Hb_003656_140 0.1037630313 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
18 Hb_005731_120 0.1058594262 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
19 Hb_041392_010 0.1069061357 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
20 Hb_012799_130 0.1074843561 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004934_070 Hb_004934_070 Hb_005862_010 Hb_005862_010 Hb_004934_070--Hb_005862_010 Hb_000785_080 Hb_000785_080 Hb_004934_070--Hb_000785_080 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004881_020 Hb_004881_020 Hb_004934_070--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_004934_070--Hb_144598_030 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_000785_080--Hb_003641_060 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_003010_020 Hb_003010_020 Hb_000785_080--Hb_003010_020 Hb_000038_080 Hb_000038_080 Hb_000785_080--Hb_000038_080 Hb_000785_080--Hb_004881_020 Hb_002671_100 Hb_002671_100 Hb_002374_020--Hb_002671_100 Hb_002374_020--Hb_144598_030 Hb_001935_130 Hb_001935_130 Hb_002374_020--Hb_001935_130 Hb_005016_170 Hb_005016_170 Hb_002374_020--Hb_005016_170 Hb_002374_020--Hb_005862_010 Hb_063716_080 Hb_063716_080 Hb_003641_060--Hb_063716_080 Hb_003641_060--Hb_004881_020 Hb_002255_030 Hb_002255_030 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020 Hb_007594_130 Hb_007594_130 Hb_004881_020--Hb_007594_130 Hb_003952_070 Hb_003952_070 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_004881_020--Hb_002671_100 Hb_020665_040 Hb_020665_040 Hb_144598_030--Hb_020665_040 Hb_144598_030--Hb_007594_130 Hb_144598_030--Hb_002671_100 Hb_004117_130 Hb_004117_130 Hb_144598_030--Hb_004117_130 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.8432 23.05 24.8767 45.8521 35.8125 101.347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.5752 33.0863 20.2973 36.4436 22.044

CAGE analysis