Hb_010931_040

Information

Type -
Description -
Location Contig10931: 13848-27347
Sequence    

Annotation

kegg
ID rcu:RCOM_0538810
description Nibrin, putative
nr
ID XP_012084677.1
description PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
swissprot
ID Q0H8D7
description Nijmegen breakage syndrome 1 protein OS=Arabidopsis thaliana GN=NBS1 PE=1 SV=1
trembl
ID A0A067K4W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21011 PE=4 SV=1
Gene Ontology
ID GO:0003006
description nijmegen breakage syndrome 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02817: 13883-17988 , PASA_asmbl_02818: 18010-27269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_040 0.0 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
2 Hb_003464_020 0.0716975618 - - srpk, putative [Ricinus communis]
3 Hb_002235_160 0.0765616636 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
4 Hb_002044_060 0.0780565323 - - elongation factor ts, putative [Ricinus communis]
5 Hb_001085_320 0.0795331598 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
6 Hb_000023_190 0.0795493835 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
7 Hb_000567_050 0.0796544309 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
8 Hb_000648_100 0.0803743094 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
9 Hb_004096_100 0.0810755547 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
10 Hb_000160_220 0.0822802021 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
11 Hb_001488_410 0.0834022696 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
12 Hb_012023_020 0.0835863721 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
13 Hb_004370_030 0.085588427 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
14 Hb_004450_010 0.0858368443 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
15 Hb_000436_040 0.0863434532 - - PREDICTED: transportin-1 [Jatropha curcas]
16 Hb_000567_010 0.0865401393 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
17 Hb_021409_170 0.0865607074 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_003641_060 0.0867508225 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
19 Hb_003124_130 0.08723683 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
20 Hb_002903_080 0.0893427656 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_010931_040 Hb_010931_040 Hb_003464_020 Hb_003464_020 Hb_010931_040--Hb_003464_020 Hb_002235_160 Hb_002235_160 Hb_010931_040--Hb_002235_160 Hb_002044_060 Hb_002044_060 Hb_010931_040--Hb_002044_060 Hb_001085_320 Hb_001085_320 Hb_010931_040--Hb_001085_320 Hb_000023_190 Hb_000023_190 Hb_010931_040--Hb_000023_190 Hb_000567_050 Hb_000567_050 Hb_010931_040--Hb_000567_050 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_003464_020--Hb_000567_050 Hb_003464_020--Hb_002044_060 Hb_000160_290 Hb_000160_290 Hb_002235_160--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_002235_160--Hb_000796_190 Hb_117552_010 Hb_117552_010 Hb_002235_160--Hb_117552_010 Hb_001235_200 Hb_001235_200 Hb_002235_160--Hb_001235_200 Hb_003124_130 Hb_003124_130 Hb_002235_160--Hb_003124_130 Hb_147737_010 Hb_147737_010 Hb_002235_160--Hb_147737_010 Hb_004370_030 Hb_004370_030 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_002044_060--Hb_000567_050 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_000868_060 Hb_000868_060 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_010381_060 Hb_000023_190--Hb_001488_410 Hb_000023_190--Hb_021409_170 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_000567_050--Hb_010381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3568 14.0811 12.6558 13.3723 19.5237 39.715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.188 8.37319 8.7812 15.878 9.4257

CAGE analysis