Hb_020665_040

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig20665: 37791-42581
Sequence    

Annotation

kegg
ID mdm:103410099
description trichohyalin-like
nr
ID XP_008347084.1
description PREDICTED: trichohyalin-like [Malus domestica]
swissprot
ID Q7LBC6
description Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2
trembl
ID A0A022Q1N5
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a019315mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description lysine-specific demethylase jmj25-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020665_040 0.0 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
2 Hb_144598_030 0.0655895891 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
3 Hb_002271_020 0.0843744223 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
4 Hb_002716_130 0.0849687809 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
5 Hb_005731_120 0.0916943736 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
6 Hb_000318_290 0.0926230079 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_033594_120 0.0934323656 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
8 Hb_144528_010 0.0937805402 - - type II inositol 5-phosphatase, putative [Ricinus communis]
9 Hb_001135_060 0.0954865883 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_000959_260 0.0967323895 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
11 Hb_005862_010 0.0967426195 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
12 Hb_003777_310 0.0968438611 - - conserved hypothetical protein [Ricinus communis]
13 Hb_148644_010 0.0969587617 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_001638_170 0.0976029164 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
15 Hb_000107_200 0.09775861 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
16 Hb_003038_210 0.0989563417 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
17 Hb_143398_010 0.0992381735 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
18 Hb_005504_060 0.1011225447 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
19 Hb_002473_130 0.1014654454 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
20 Hb_021238_050 0.1015312644 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_020665_040 Hb_020665_040 Hb_144598_030 Hb_144598_030 Hb_020665_040--Hb_144598_030 Hb_002271_020 Hb_002271_020 Hb_020665_040--Hb_002271_020 Hb_002716_130 Hb_002716_130 Hb_020665_040--Hb_002716_130 Hb_005731_120 Hb_005731_120 Hb_020665_040--Hb_005731_120 Hb_000318_290 Hb_000318_290 Hb_020665_040--Hb_000318_290 Hb_033594_120 Hb_033594_120 Hb_020665_040--Hb_033594_120 Hb_007594_130 Hb_007594_130 Hb_144598_030--Hb_007594_130 Hb_002671_100 Hb_002671_100 Hb_144598_030--Hb_002671_100 Hb_004117_130 Hb_004117_130 Hb_144598_030--Hb_004117_130 Hb_004881_020 Hb_004881_020 Hb_144598_030--Hb_004881_020 Hb_144598_030--Hb_002716_130 Hb_002473_130 Hb_002473_130 Hb_002271_020--Hb_002473_130 Hb_143398_010 Hb_143398_010 Hb_002271_020--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_002716_130--Hb_004117_130 Hb_000010_330 Hb_000010_330 Hb_002716_130--Hb_000010_330 Hb_000085_160 Hb_000085_160 Hb_002716_130--Hb_000085_160 Hb_000212_240 Hb_000212_240 Hb_002716_130--Hb_000212_240 Hb_006252_040 Hb_006252_040 Hb_002716_130--Hb_006252_040 Hb_007317_110 Hb_007317_110 Hb_002716_130--Hb_007317_110 Hb_144528_010 Hb_144528_010 Hb_005731_120--Hb_144528_010 Hb_002235_170 Hb_002235_170 Hb_005731_120--Hb_002235_170 Hb_005731_120--Hb_005291_030 Hb_005914_080 Hb_005914_080 Hb_005731_120--Hb_005914_080 Hb_000031_220 Hb_000031_220 Hb_005731_120--Hb_000031_220 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_003633_030 Hb_003633_030 Hb_033594_120--Hb_003633_030 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_000960_060 Hb_000960_060 Hb_033594_120--Hb_000960_060 Hb_033594_120--Hb_002473_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.71358 5.61313 4.17554 10.2027 9.50874 20.1321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.86073 11.8129 7.37517 7.00207 7.20025

CAGE analysis