Hb_000212_240

Information

Type -
Description -
Location Contig212: 270981-277879
Sequence    

Annotation

kegg
ID rcu:RCOM_1077640
description short-chain dehydrogenase, putative (EC:1.1.1.62)
nr
ID XP_002514813.1
description short-chain dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9Y394
description Dehydrogenase/reductase SDR family member 7 OS=Homo sapiens GN=DHRS7 PE=1 SV=1
trembl
ID B9RM44
description Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_1077640 PE=4 SV=1
Gene Ontology
ID GO:0004303
description dehydrogenase reductase sdr family member 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21957: 271891-277883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_240 0.0 - - short-chain dehydrogenase, putative [Ricinus communis]
2 Hb_004881_020 0.0626674829 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
3 Hb_006252_040 0.0634544553 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
4 Hb_002716_130 0.0670813381 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
5 Hb_000025_110 0.0679954721 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
6 Hb_004117_130 0.0684493639 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
7 Hb_000606_090 0.0685679153 - - Far upstream element-binding protein, putative [Ricinus communis]
8 Hb_007594_130 0.0694223612 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
9 Hb_000567_050 0.069779126 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
10 Hb_103012_010 0.0732541349 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
11 Hb_030131_040 0.0753747563 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
12 Hb_000260_170 0.0779868723 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
13 Hb_002045_240 0.0782842604 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
14 Hb_002671_100 0.0784627477 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
15 Hb_020719_030 0.0784869004 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
16 Hb_144598_030 0.0812018314 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
17 Hb_016898_010 0.0815702826 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
18 Hb_000023_190 0.082115022 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_032050_040 0.0828176222 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
20 Hb_001488_410 0.0828659983 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]

Gene co-expression network

sample Hb_000212_240 Hb_000212_240 Hb_004881_020 Hb_004881_020 Hb_000212_240--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_000025_110 Hb_000025_110 Hb_000212_240--Hb_000025_110 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090 Hb_007594_130 Hb_007594_130 Hb_004881_020--Hb_007594_130 Hb_003952_070 Hb_003952_070 Hb_004881_020--Hb_003952_070 Hb_004881_020--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_002716_130--Hb_004117_130 Hb_000010_330 Hb_000010_330 Hb_002716_130--Hb_000010_330 Hb_000085_160 Hb_000085_160 Hb_002716_130--Hb_000085_160 Hb_002716_130--Hb_006252_040 Hb_007317_110 Hb_007317_110 Hb_002716_130--Hb_007317_110 Hb_001444_010 Hb_001444_010 Hb_000025_110--Hb_001444_010 Hb_000025_110--Hb_006252_040 Hb_000618_030 Hb_000618_030 Hb_000025_110--Hb_000618_030 Hb_000679_130 Hb_000679_130 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_001135_060 Hb_001135_060 Hb_000606_090--Hb_001135_060 Hb_000494_040 Hb_000494_040 Hb_000606_090--Hb_000494_040 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_000606_090--Hb_001444_010 Hb_000606_090--Hb_000025_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.013 12.6585 10.4432 17.4002 24.269 34.9903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4515 12.8051 12.7721 13.1086 14.4816

CAGE analysis