Hb_000679_130

Information

Type -
Description -
Location Contig679: 95450-97212
Sequence    

Annotation

kegg
ID rcu:RCOM_2033650
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002535684.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q40469
description Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9TBR5
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_2033650 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 56-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53689: 95526-118366 , PASA_asmbl_53690: 95526-118366 , PASA_asmbl_53691: 95526-118325 , PASA_asmbl_53692: 95526-115952
cDNA
(Sanger)
(ID:Location)		 053_B12.ab1: 95526-95749

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_130 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_000025_110 0.067607976 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
3 Hb_001444_010 0.0701729578 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
4 Hb_000367_130 0.0721342355 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001599_030 0.0759017573 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
6 Hb_007262_020 0.0784708313 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
7 Hb_006915_060 0.0816198691 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
8 Hb_007904_120 0.0845410666 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
9 Hb_003018_130 0.0848892613 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
10 Hb_000797_050 0.0852656868 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
11 Hb_011139_030 0.0857755573 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
12 Hb_030312_080 0.0860426885 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
13 Hb_002749_110 0.0862395392 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
14 Hb_006064_010 0.0877172063 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
15 Hb_008695_020 0.0879098573 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
16 Hb_073171_040 0.0887160467 - - malic enzyme, putative [Ricinus communis]
17 Hb_003641_050 0.0887502419 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
18 Hb_000618_030 0.0903245936 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
19 Hb_009646_030 0.0904674525 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000606_090 0.090927826 - - Far upstream element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000679_130 Hb_000679_130 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_000025_110--Hb_001444_010 Hb_006252_040 Hb_006252_040 Hb_000025_110--Hb_006252_040 Hb_000618_030 Hb_000618_030 Hb_000025_110--Hb_000618_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_001444_010--Hb_000618_030 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000367_130--Hb_000913_050 Hb_001983_030 Hb_001983_030 Hb_000367_130--Hb_001983_030 Hb_000367_130--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_000367_130--Hb_007026_030 Hb_001828_160 Hb_001828_160 Hb_000367_130--Hb_001828_160 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_012098_110 Hb_012098_110 Hb_007262_020--Hb_012098_110 Hb_007904_120 Hb_007904_120 Hb_007262_020--Hb_007904_120 Hb_000498_010 Hb_000498_010 Hb_007262_020--Hb_000498_010 Hb_007262_020--Hb_000025_110 Hb_007262_020--Hb_001444_010 Hb_006915_060--Hb_003544_100 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_003847_120 Hb_003847_120 Hb_006915_060--Hb_003847_120 Hb_000010_180 Hb_000010_180 Hb_006915_060--Hb_000010_180 Hb_006915_060--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.3945 34.5491 50.4319 39.0276 85.4331 102.655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2263 38.5126 54.2142 25.4604 53.6446

CAGE analysis