Hb_000367_130

Information

Type -
Description -
Location Contig367: 123208-130440
Sequence    

Annotation

kegg
ID rcu:RCOM_1470480
description hypothetical protein
nr
ID XP_002514690.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37740: 123238-124224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000913_050 0.062202258 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
3 Hb_000679_130 0.0721342355 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001983_030 0.0735583954 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
5 Hb_001444_010 0.0759612126 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
6 Hb_007026_030 0.0775919274 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
7 Hb_001828_160 0.0778995143 - - hypothetical protein F775_31105 [Aegilops tauschii]
8 Hb_003125_160 0.0788133137 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_001369_180 0.0798368531 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
10 Hb_000606_090 0.079984198 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_000794_050 0.081042878 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
12 Hb_006064_010 0.0811676596 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
13 Hb_000025_110 0.0817289334 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
14 Hb_000345_170 0.0819687117 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
15 Hb_033720_010 0.0844582621 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
16 Hb_156973_010 0.0850012474 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000116_180 0.0851089499 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
18 Hb_002918_030 0.0852722626 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
19 Hb_023386_020 0.0865644921 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
20 Hb_006620_020 0.0870776074 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_130 Hb_000367_130 Hb_000913_050 Hb_000913_050 Hb_000367_130--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_000367_130--Hb_000679_130 Hb_001983_030 Hb_001983_030 Hb_000367_130--Hb_001983_030 Hb_001444_010 Hb_001444_010 Hb_000367_130--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_000367_130--Hb_007026_030 Hb_001828_160 Hb_001828_160 Hb_000367_130--Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_000913_050--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_000679_130--Hb_001444_010 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_001983_030--Hb_000913_050 Hb_002918_030 Hb_002918_030 Hb_001983_030--Hb_002918_030 Hb_178968_100 Hb_178968_100 Hb_001983_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_001983_030--Hb_003044_100 Hb_135377_010 Hb_135377_010 Hb_001983_030--Hb_135377_010 Hb_001444_010--Hb_000025_110 Hb_000618_030 Hb_000618_030 Hb_001444_010--Hb_000618_030 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_007026_030--Hb_178968_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_001828_160--Hb_000207_310 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9715 3.69163 5.21667 4.60525 9.32013 10.4304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.75631 6.13513 3.826 3.26459 5.90051

CAGE analysis