Hb_135377_010

Information

Type -
Description -
Location Contig135377: 1279-3767
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07290g
description hypothetical protein
nr
ID XP_012066602.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
swissprot
ID Q9LQ14
description Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2
trembl
ID A0A067K694
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14934 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09877: 1761-2607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135377_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
2 Hb_001105_010 0.078952815 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
3 Hb_007026_030 0.0809750073 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
4 Hb_001983_030 0.0843825514 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
5 Hb_178968_100 0.0846878596 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
6 Hb_000797_050 0.0856500014 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
7 Hb_001102_080 0.0908745048 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
8 Hb_000028_610 0.0955521572 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
9 Hb_007632_110 0.0963530652 - - chromatin regulatory protein sir2, putative [Ricinus communis]
10 Hb_008556_030 0.096721949 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
11 Hb_003006_060 0.0983073959 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
12 Hb_000392_050 0.1003731205 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
13 Hb_007044_040 0.1012407885 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
14 Hb_003044_100 0.1046857075 - - hypothetical protein F383_08446 [Gossypium arboreum]
15 Hb_003467_010 0.1056207885 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
16 Hb_000913_050 0.1068499016 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
17 Hb_022693_120 0.1069346477 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
18 Hb_000367_130 0.1071405973 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002942_050 0.1088194265 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
20 Hb_001235_200 0.109063507 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_135377_010 Hb_135377_010 Hb_001105_010 Hb_001105_010 Hb_135377_010--Hb_001105_010 Hb_007026_030 Hb_007026_030 Hb_135377_010--Hb_007026_030 Hb_001983_030 Hb_001983_030 Hb_135377_010--Hb_001983_030 Hb_178968_100 Hb_178968_100 Hb_135377_010--Hb_178968_100 Hb_000797_050 Hb_000797_050 Hb_135377_010--Hb_000797_050 Hb_001102_080 Hb_001102_080 Hb_135377_010--Hb_001102_080 Hb_007632_110 Hb_007632_110 Hb_001105_010--Hb_007632_110 Hb_003467_010 Hb_003467_010 Hb_001105_010--Hb_003467_010 Hb_006355_010 Hb_006355_010 Hb_001105_010--Hb_006355_010 Hb_009222_010 Hb_009222_010 Hb_001105_010--Hb_009222_010 Hb_000392_050 Hb_000392_050 Hb_001105_010--Hb_000392_050 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_000913_050 Hb_000913_050 Hb_001983_030--Hb_000913_050 Hb_000367_130 Hb_000367_130 Hb_001983_030--Hb_000367_130 Hb_002918_030 Hb_002918_030 Hb_001983_030--Hb_002918_030 Hb_001983_030--Hb_178968_100 Hb_001983_030--Hb_003044_100 Hb_004450_060 Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_008556_030 Hb_008556_030 Hb_000797_050--Hb_008556_030 Hb_001444_010 Hb_001444_010 Hb_000797_050--Hb_001444_010 Hb_000480_010 Hb_000480_010 Hb_000797_050--Hb_000480_010 Hb_000679_130 Hb_000679_130 Hb_000797_050--Hb_000679_130 Hb_000797_050--Hb_001983_030 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.2401 13.8631 28.3917 17.0111 36.4026 48.9443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5266 20.2769 12.9164 19.5474 16.745

CAGE analysis