Hb_178968_100

Information

Type -
Description -
Location Contig178968: 92979-103071
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18620g
description POPTRDRAFT_831004; hypothetical protein
nr
ID XP_011020540.1
description PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
swissprot
ID Q40784
description Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1
trembl
ID B9GXM3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s18620g PE=4 SV=1
Gene Ontology
ID GO:0016853
description glucose-6-phosphate 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17260: 97123-97268 , PASA_asmbl_17261: 99221-99473 , PASA_asmbl_17262: 101982-102617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_100 0.0 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
2 Hb_004450_060 0.0677712205 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
3 Hb_007026_030 0.0695034813 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
4 Hb_000088_200 0.0705512141 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_000808_250 0.0709329254 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
6 Hb_003467_010 0.0733458774 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
7 Hb_006623_020 0.0776301201 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
8 Hb_001575_100 0.0781081488 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
9 Hb_003044_100 0.0800215283 - - hypothetical protein F383_08446 [Gossypium arboreum]
10 Hb_001983_030 0.0823364922 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
11 Hb_021422_010 0.0834126891 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
12 Hb_009222_010 0.0843154437 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_135377_010 0.0846878596 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
14 Hb_003849_060 0.0849216627 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
15 Hb_004044_020 0.0863032449 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
16 Hb_004525_100 0.0870801821 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
17 Hb_000207_310 0.0894434381 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
18 Hb_031939_010 0.089693105 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
19 Hb_001828_160 0.0899267592 - - hypothetical protein F775_31105 [Aegilops tauschii]
20 Hb_022693_120 0.0916522604 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]

Gene co-expression network

sample Hb_178968_100 Hb_178968_100 Hb_004450_060 Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_007026_030 Hb_007026_030 Hb_178968_100--Hb_007026_030 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_003467_010 Hb_003467_010 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_004450_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_004450_060--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_004450_060--Hb_003091_010 Hb_003849_060 Hb_003849_060 Hb_004450_060--Hb_003849_060 Hb_000359_330 Hb_000359_330 Hb_004450_060--Hb_000359_330 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_004044_020 Hb_004044_020 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_000808_250--Hb_006623_020 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000808_250--Hb_000359_330 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.26835 2.36367 3.86618 1.84752 7.07819 6.7839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23436 4.77411 1.91317 2.53399 2.28258

CAGE analysis