Hb_012098_110

Information

Type -
Description -
Location Contig12098: 70141-77179
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01390g
description POPTRDRAFT_712217; hypothetical protein
nr
ID KHG12509.1
description Ribonuclease 3 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NL14
description Ribonuclease 3 OS=Gossypium arboreum GN=F383_04608 PE=4 SV=1
Gene Ontology
ID GO:0009941
description ribonuclease 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06457: 70083-77168
cDNA
(Sanger)
(ID:Location)		 024_B22.ab1: 70556-75559

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_110 0.0 - - Ribonuclease 3 [Gossypium arboreum]
2 Hb_007262_020 0.0584371996 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
3 Hb_007026_030 0.0749911054 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
4 Hb_007904_120 0.0767087338 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
5 Hb_010381_060 0.0771048814 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_000714_050 0.0784023283 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
7 Hb_000498_010 0.0790213847 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_005914_060 0.0796343467 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
9 Hb_000794_050 0.083204322 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
10 Hb_000836_440 0.0832535219 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000029_130 0.0837444807 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
12 Hb_001599_030 0.0851756795 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
13 Hb_000926_190 0.0868801066 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
14 Hb_007307_020 0.0871411463 - - DNA binding protein, putative [Ricinus communis]
15 Hb_005892_030 0.0882515109 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
16 Hb_009265_080 0.08893167 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
17 Hb_000002_040 0.089423774 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
18 Hb_023386_040 0.0899597221 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
19 Hb_001235_200 0.0899686832 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006915_060 0.0905298728 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_012098_110 Hb_012098_110 Hb_007262_020 Hb_007262_020 Hb_012098_110--Hb_007262_020 Hb_007026_030 Hb_007026_030 Hb_012098_110--Hb_007026_030 Hb_007904_120 Hb_007904_120 Hb_012098_110--Hb_007904_120 Hb_010381_060 Hb_010381_060 Hb_012098_110--Hb_010381_060 Hb_000714_050 Hb_000714_050 Hb_012098_110--Hb_000714_050 Hb_000498_010 Hb_000498_010 Hb_012098_110--Hb_000498_010 Hb_007262_020--Hb_007904_120 Hb_007262_020--Hb_000498_010 Hb_000679_130 Hb_000679_130 Hb_007262_020--Hb_000679_130 Hb_000025_110 Hb_000025_110 Hb_007262_020--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_007262_020--Hb_001444_010 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_001377_320 Hb_001377_320 Hb_007904_120--Hb_001377_320 Hb_007007_060 Hb_007007_060 Hb_007904_120--Hb_007007_060 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_000390_180 Hb_000390_180 Hb_000498_010--Hb_000390_180 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000853_230 Hb_000853_230 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000498_010--Hb_000794_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.6915 29.3203 31.5419 12.1609 49.8137 71.0811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.7806 24.0838 24.9119 25.469 30.4376

CAGE analysis