Hb_000480_010

Information

Type -
Description -
Location Contig480: 10420-14385
Sequence    

Annotation

kegg
ID rcu:RCOM_0724570
description hypothetical protein
nr
ID XP_002524889.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000480_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003126_100 0.0614665671 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
3 Hb_001102_080 0.0628754544 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
4 Hb_002888_070 0.0634364994 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
5 Hb_001341_120 0.0652782245 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
6 Hb_000868_060 0.0737157523 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
7 Hb_007044_040 0.0795308918 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
8 Hb_000395_020 0.0796338785 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
9 Hb_008556_030 0.0835282902 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
10 Hb_000640_220 0.0835669739 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
11 Hb_000797_050 0.0849534866 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
12 Hb_000002_490 0.0863313795 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
13 Hb_030131_040 0.0869234927 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
14 Hb_001050_010 0.0880656799 - - Advillin [Gossypium arboreum]
15 Hb_018790_070 0.0884366287 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
16 Hb_000914_080 0.0885166441 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_030827_030 0.0892770235 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
18 Hb_091384_010 0.0906190864 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
19 Hb_000913_050 0.0922643797 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
20 Hb_001501_060 0.0923529074 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000480_010 Hb_000480_010 Hb_003126_100 Hb_003126_100 Hb_000480_010--Hb_003126_100 Hb_001102_080 Hb_001102_080 Hb_000480_010--Hb_001102_080 Hb_002888_070 Hb_002888_070 Hb_000480_010--Hb_002888_070 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000868_060 Hb_000868_060 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_003126_100--Hb_002888_070 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030 Hb_001102_080--Hb_002888_070 Hb_001102_080--Hb_007044_040 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_002888_070--Hb_000868_060 Hb_002888_070--Hb_000914_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080 Hb_030131_040 Hb_030131_040 Hb_001341_120--Hb_030131_040 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001341_120--Hb_002273_130 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_000913_050 Hb_000913_050 Hb_001341_120--Hb_000913_050 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_007044_040--Hb_003126_100 Hb_007044_040--Hb_002093_030 Hb_011915_010 Hb_011915_010 Hb_007044_040--Hb_011915_010 Hb_007044_040--Hb_002888_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8029 6.24677 12.9732 10.5248 23.6467 20.7487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65355 7.10965 6.91042 10.2375 5.71573

CAGE analysis