Hb_001341_120

Information

Type -
Description -
Location Contig1341: 97438-101702
Sequence    

Annotation

kegg
ID pxb:103934309
description protein disulfide isomerase-like 5-1
nr
ID KJB09229.1
description hypothetical protein B456_001G130300 [Gossypium raimondii]
swissprot
ID Q8GYD1
description Protein disulfide-isomerase 5-1 OS=Arabidopsis thaliana GN=PDIL5-1 PE=2 SV=1
trembl
ID A0A0D2PQQ3
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G130300 PE=4 SV=1
Gene Ontology
ID GO:0009507
description disulfide-isomerase 5-1 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09695: 97552-101547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_120 0.0 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
2 Hb_030131_040 0.0593471425 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
3 Hb_000076_270 0.061053152 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
4 Hb_002273_130 0.0646616835 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
5 Hb_000480_010 0.0652782245 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004837_190 0.0699315691 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
7 Hb_000913_050 0.070226091 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
8 Hb_001488_410 0.0734082772 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
9 Hb_001541_090 0.0739623591 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_001300_070 0.0745674171 - - OTU domain-containing protein 6B, putative [Ricinus communis]
11 Hb_103012_010 0.0798934152 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_020719_030 0.0829440202 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
13 Hb_003126_100 0.0835668442 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
14 Hb_001444_010 0.0841730718 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
15 Hb_040262_010 0.0860254146 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
16 Hb_091384_010 0.0863015317 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
17 Hb_000538_100 0.0863254133 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003464_020 0.0872410118 - - srpk, putative [Ricinus communis]
19 Hb_002272_180 0.0882254461 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
20 Hb_008103_040 0.0889880354 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_120 Hb_001341_120 Hb_030131_040 Hb_030131_040 Hb_001341_120--Hb_030131_040 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_000913_050 Hb_000913_050 Hb_001341_120--Hb_000913_050 Hb_030131_040--Hb_002273_130 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_000076_270--Hb_002273_130 Hb_001300_070 Hb_001300_070 Hb_000076_270--Hb_001300_070 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000076_270--Hb_000913_050 Hb_002272_180 Hb_002272_180 Hb_000076_270--Hb_002272_180 Hb_002273_130--Hb_001541_090 Hb_000059_150 Hb_000059_150 Hb_002273_130--Hb_000059_150 Hb_002273_130--Hb_001300_070 Hb_003126_100 Hb_003126_100 Hb_000480_010--Hb_003126_100 Hb_001102_080 Hb_001102_080 Hb_000480_010--Hb_001102_080 Hb_002888_070 Hb_002888_070 Hb_000480_010--Hb_002888_070 Hb_000868_060 Hb_000868_060 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_006620_020 Hb_006620_020 Hb_004837_190--Hb_006620_020 Hb_031527_100 Hb_031527_100 Hb_004837_190--Hb_031527_100 Hb_004837_190--Hb_000913_050 Hb_000538_100 Hb_000538_100 Hb_004837_190--Hb_000538_100 Hb_000618_030 Hb_000618_030 Hb_004837_190--Hb_000618_030 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2491 4.66665 7.9714 8.84427 18.0387 16.0196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.53254 7.03836 5.30496 8.36932 5.32111

CAGE analysis