Hb_031527_100

Information

Type -
Description -
Location Contig31527: 68725-80398
Sequence    

Annotation

kegg
ID rcu:RCOM_1604350
description hypothetical protein
nr
ID XP_002526586.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFI2
description Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1
trembl
ID B9SKR7
description Autophagy protein 5 OS=Ricinus communis GN=RCOM_1604350 PE=3 SV=1
Gene Ontology
ID GO:0005737
description autophagy protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33267: 68689-80331 , PASA_asmbl_33268: 68743-80331
cDNA
(Sanger)
(ID:Location)		 030_C13.ab1: 68698-70830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004837_190 0.06949469 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
3 Hb_005503_030 0.0712621131 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
4 Hb_054865_100 0.0730139006 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
5 Hb_008887_050 0.0748837659 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_000327_120 0.0768917757 - - FGFR1 oncogene partner, putative [Ricinus communis]
7 Hb_000477_030 0.0861690292 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
8 Hb_005505_050 0.0863135497 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
9 Hb_000392_300 0.0869420366 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
10 Hb_031939_010 0.0871435366 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_001541_260 0.0874385112 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
12 Hb_009646_030 0.0886284133 - - conserved hypothetical protein [Ricinus communis]
13 Hb_066182_010 0.0900203604 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_003018_060 0.0901264973 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
15 Hb_006620_020 0.0902265581 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_000645_050 0.0905907913 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
17 Hb_000358_250 0.0920012785 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
18 Hb_001124_120 0.092742272 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
19 Hb_003020_010 0.092958082 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
20 Hb_007576_040 0.0931877041 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]

Gene co-expression network

sample Hb_031527_100 Hb_031527_100 Hb_004837_190 Hb_004837_190 Hb_031527_100--Hb_004837_190 Hb_005503_030 Hb_005503_030 Hb_031527_100--Hb_005503_030 Hb_054865_100 Hb_054865_100 Hb_031527_100--Hb_054865_100 Hb_008887_050 Hb_008887_050 Hb_031527_100--Hb_008887_050 Hb_000327_120 Hb_000327_120 Hb_031527_100--Hb_000327_120 Hb_000477_030 Hb_000477_030 Hb_031527_100--Hb_000477_030 Hb_006620_020 Hb_006620_020 Hb_004837_190--Hb_006620_020 Hb_001341_120 Hb_001341_120 Hb_004837_190--Hb_001341_120 Hb_000913_050 Hb_000913_050 Hb_004837_190--Hb_000913_050 Hb_000538_100 Hb_000538_100 Hb_004837_190--Hb_000538_100 Hb_000618_030 Hb_000618_030 Hb_004837_190--Hb_000618_030 Hb_143629_010 Hb_143629_010 Hb_005503_030--Hb_143629_010 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_001006_170 Hb_001006_170 Hb_005503_030--Hb_001006_170 Hb_005503_030--Hb_008887_050 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_054865_100--Hb_006620_020 Hb_054865_100--Hb_000327_120 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_008887_050--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_005505_050 Hb_005505_050 Hb_000477_030--Hb_005505_050 Hb_106552_050 Hb_106552_050 Hb_000477_030--Hb_106552_050 Hb_001083_050 Hb_001083_050 Hb_000477_030--Hb_001083_050 Hb_002784_050 Hb_002784_050 Hb_000477_030--Hb_002784_050 Hb_001541_260 Hb_001541_260 Hb_000477_030--Hb_001541_260 Hb_009252_100 Hb_009252_100 Hb_000477_030--Hb_009252_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3683 6.69466 10.278 6.23324 25.0194 14.5785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7289 11.917 12.4152 6.93779 5.58301

CAGE analysis