Hb_004994_040

Information

Type -
Description -
Location Contig4994: 27189-33169
Sequence    

Annotation

kegg
ID rcu:RCOM_1614250
description Glycogen synthase kinase-3 beta, putative (EC:2.7.11.26)
nr
ID XP_002511803.1
description Glycogen synthase kinase-3 beta, putative [Ricinus communis]
swissprot
ID Q96287
description Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3
trembl
ID B9RDL4
description Glycogen synthase kinase-3 beta, putative OS=Ricinus communis GN=RCOM_1614250 PE=4 SV=1
Gene Ontology
ID GO:0005524
description shaggy-related protein kinase theta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45618: 27204-33116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_040 0.0 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
2 Hb_011174_090 0.0448082636 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
3 Hb_007592_030 0.0622985407 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_000618_030 0.0701061088 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
5 Hb_002304_090 0.0725644973 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
6 Hb_001444_010 0.072709669 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
7 Hb_009627_010 0.0735704448 - - Protein dom-3, putative [Ricinus communis]
8 Hb_010381_060 0.0752445815 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
9 Hb_000470_070 0.0752932956 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
10 Hb_001488_410 0.0782307272 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_002888_070 0.0793434987 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
12 Hb_003813_040 0.079775898 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
13 Hb_030131_040 0.0801538675 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
14 Hb_000208_210 0.0804297884 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
15 Hb_003126_100 0.0811637917 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
16 Hb_000777_050 0.0818090068 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
17 Hb_028308_010 0.082307847 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
18 Hb_000538_100 0.0836610541 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002255_050 0.0838190958 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_103012_010 0.084082675 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_040 Hb_004994_040 Hb_011174_090 Hb_011174_090 Hb_004994_040--Hb_011174_090 Hb_007592_030 Hb_007592_030 Hb_004994_040--Hb_007592_030 Hb_000618_030 Hb_000618_030 Hb_004994_040--Hb_000618_030 Hb_002304_090 Hb_002304_090 Hb_004994_040--Hb_002304_090 Hb_001444_010 Hb_001444_010 Hb_004994_040--Hb_001444_010 Hb_009627_010 Hb_009627_010 Hb_004994_040--Hb_009627_010 Hb_011174_090--Hb_007592_030 Hb_011174_090--Hb_002304_090 Hb_011174_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_011174_090--Hb_007188_070 Hb_000109_210 Hb_000109_210 Hb_011174_090--Hb_000109_210 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_000445_050 Hb_000445_050 Hb_007592_030--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_007592_030--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_002304_090--Hb_000538_100 Hb_002304_090--Hb_009627_010 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_001444_010--Hb_000025_110 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_001444_010--Hb_000679_130 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.619 18.3993 26.3977 20.7619 42.5185 48.0139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4632 12.3958 24.8642 22.6897 17.6227

CAGE analysis