Hb_000109_210

Information

Type -
Description -
Location Contig109: 296216-310714
Sequence    

Annotation

kegg
ID cmo:103499347
description threonine--tRNA ligase, mitochondrial
nr
ID XP_012092067.1
description PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID O04630
description Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3
trembl
ID A0A067JEY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21794 PE=3 SV=1
Gene Ontology
ID GO:0005737
description threonine--trna mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02729: 309637-310075 , PASA_asmbl_02730: 296266-310697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_210 0.0 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_002684_040 0.0703412373 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
3 Hb_000470_070 0.0724518929 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
4 Hb_000333_060 0.0733535715 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
5 Hb_019654_040 0.0738998254 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
6 Hb_000983_150 0.0761460741 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
7 Hb_011174_090 0.078886842 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
8 Hb_007904_160 0.0827941065 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
9 Hb_000777_050 0.0847688236 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
10 Hb_009296_010 0.0849287627 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
11 Hb_004994_040 0.085257856 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_000351_120 0.0854003046 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
13 Hb_001617_060 0.0856439301 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
14 Hb_023480_010 0.0861153137 - - cellular nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000367_010 0.0866654836 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
16 Hb_000462_060 0.0871280545 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
17 Hb_000617_180 0.087550185 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
18 Hb_008120_030 0.0878311745 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
19 Hb_002398_030 0.0883046713 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_000008_290 0.0904549558 - - PREDICTED: protein SAND [Jatropha curcas]

Gene co-expression network

sample Hb_000109_210 Hb_000109_210 Hb_002684_040 Hb_002684_040 Hb_000109_210--Hb_002684_040 Hb_000470_070 Hb_000470_070 Hb_000109_210--Hb_000470_070 Hb_000333_060 Hb_000333_060 Hb_000109_210--Hb_000333_060 Hb_019654_040 Hb_019654_040 Hb_000109_210--Hb_019654_040 Hb_000983_150 Hb_000983_150 Hb_000109_210--Hb_000983_150 Hb_011174_090 Hb_011174_090 Hb_000109_210--Hb_011174_090 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_003878_110 Hb_003878_110 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_009296_010 Hb_009296_010 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_001935_110 Hb_001935_110 Hb_000333_060--Hb_001935_110 Hb_028308_010 Hb_028308_010 Hb_000333_060--Hb_028308_010 Hb_000333_060--Hb_002684_040 Hb_000333_060--Hb_002078_100 Hb_007632_240 Hb_007632_240 Hb_000333_060--Hb_007632_240 Hb_019654_040--Hb_009296_010 Hb_019654_040--Hb_001935_110 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_004994_040 Hb_004994_040 Hb_011174_090--Hb_004994_040 Hb_007592_030 Hb_007592_030 Hb_011174_090--Hb_007592_030 Hb_002304_090 Hb_002304_090 Hb_011174_090--Hb_002304_090 Hb_009627_010 Hb_009627_010 Hb_011174_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_011174_090--Hb_007188_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.9933 19.8019 30.9474 24.0812 30.5605 45.138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1861 13.3524 27.0787 35.6547 20.5625

CAGE analysis