Hb_000367_010

Information

Type -
Description -
Location Contig367: 6371-13338
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06710g
description POPTRDRAFT_569930; hypothetical protein
nr
ID XP_012080362.1
description PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
swissprot
ID Q9FNQ0
description Protein LEO1 homolog OS=Arabidopsis thaliana GN=VIP4 PE=1 SV=1
trembl
ID A0A067K5D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11708 PE=4 SV=1
Gene Ontology
ID GO:0016593
description rna polymerase-associated protein leo1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37724: 12075-13209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_010 0.0 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
2 Hb_000983_150 0.0582078697 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
3 Hb_007904_160 0.0650550627 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
4 Hb_003680_150 0.0687029329 - - srpk, putative [Ricinus communis]
5 Hb_023480_010 0.0752371894 - - cellular nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000700_140 0.0781763792 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
7 Hb_001617_060 0.0816704575 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
8 Hb_000470_070 0.0826939794 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
9 Hb_000008_290 0.082829426 - - PREDICTED: protein SAND [Jatropha curcas]
10 Hb_002684_040 0.0845720796 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
11 Hb_004102_140 0.0846234798 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002890_020 0.0855080924 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
13 Hb_004935_030 0.0862633478 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
14 Hb_002078_020 0.0865734616 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
15 Hb_000109_210 0.0866654836 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_010193_050 0.0866816047 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002946_160 0.0872819213 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
18 Hb_001599_030 0.0876255527 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
19 Hb_000028_610 0.0880144923 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
20 Hb_001493_030 0.0886062298 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]

Gene co-expression network

sample Hb_000367_010 Hb_000367_010 Hb_000983_150 Hb_000983_150 Hb_000367_010--Hb_000983_150 Hb_007904_160 Hb_007904_160 Hb_000367_010--Hb_007904_160 Hb_003680_150 Hb_003680_150 Hb_000367_010--Hb_003680_150 Hb_023480_010 Hb_023480_010 Hb_000367_010--Hb_023480_010 Hb_000700_140 Hb_000700_140 Hb_000367_010--Hb_000700_140 Hb_001617_060 Hb_001617_060 Hb_000367_010--Hb_001617_060 Hb_000983_150--Hb_007904_160 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_000109_210 Hb_000109_210 Hb_007904_160--Hb_000109_210 Hb_000212_310 Hb_000212_310 Hb_007904_160--Hb_000212_310 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_000083_250 Hb_000083_250 Hb_007904_160--Hb_000083_250 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_023480_010--Hb_000853_230 Hb_001493_030 Hb_001493_030 Hb_000700_140--Hb_001493_030 Hb_030116_020 Hb_030116_020 Hb_000700_140--Hb_030116_020 Hb_000700_140--Hb_143629_110 Hb_000123_210 Hb_000123_210 Hb_000700_140--Hb_000123_210 Hb_106371_010 Hb_106371_010 Hb_000700_140--Hb_106371_010 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71852 3.4334 3.2414 3.91984 5.18034 7.14647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33359 3.63946 4.01786 5.51417 3.40228

CAGE analysis