Hb_000083_250

Information

Type -
Description -
Location Contig83: 305706-306833
Sequence    

Annotation

kegg
ID rcu:RCOM_0884200
description ring finger protein, putative
nr
ID XP_002522602.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q8LFY8
description RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2
trembl
ID B9S9D3
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0884200 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl54-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59790: 305614-306664 , PASA_asmbl_59791: 306737-306883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_250 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000808_280 0.0698578062 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001454_130 0.0715845428 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
4 Hb_000630_050 0.0854767528 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007904_160 0.0879022144 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
6 Hb_000146_050 0.0962311632 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
7 Hb_001018_130 0.09642532 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
8 Hb_044736_010 0.0974486894 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_002445_120 0.0985194393 - - secretory carrier membrane protein, putative [Ricinus communis]
10 Hb_003665_060 0.0990745104 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
11 Hb_002828_020 0.0998774235 - - protein binding protein, putative [Ricinus communis]
12 Hb_000365_390 0.1005699198 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
13 Hb_000120_060 0.1031205605 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
14 Hb_006634_070 0.1033795177 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
15 Hb_000983_150 0.1036702175 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
16 Hb_000205_300 0.103800736 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
17 Hb_000249_070 0.1057990616 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
18 Hb_002200_080 0.1059445197 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
19 Hb_106724_020 0.1069264247 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
20 Hb_002946_160 0.1074018218 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_250 Hb_000083_250 Hb_000808_280 Hb_000808_280 Hb_000083_250--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_000083_250--Hb_001454_130 Hb_000630_050 Hb_000630_050 Hb_000083_250--Hb_000630_050 Hb_007904_160 Hb_007904_160 Hb_000083_250--Hb_007904_160 Hb_000146_050 Hb_000146_050 Hb_000083_250--Hb_000146_050 Hb_001018_130 Hb_001018_130 Hb_000083_250--Hb_001018_130 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_003693_070 Hb_003693_070 Hb_000808_280--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_001454_130--Hb_000630_050 Hb_145314_010 Hb_145314_010 Hb_001454_130--Hb_145314_010 Hb_001454_130--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_001454_130--Hb_106724_020 Hb_150986_010 Hb_150986_010 Hb_001454_130--Hb_150986_010 Hb_000630_050--Hb_106724_020 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200 Hb_000983_150 Hb_000983_150 Hb_007904_160--Hb_000983_150 Hb_000367_010 Hb_000367_010 Hb_007904_160--Hb_000367_010 Hb_000109_210 Hb_000109_210 Hb_007904_160--Hb_000109_210 Hb_000212_310 Hb_000212_310 Hb_007904_160--Hb_000212_310 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_090051_030 Hb_090051_030 Hb_000146_050--Hb_090051_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_001633_130 Hb_001633_130 Hb_000146_050--Hb_001633_130 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300 Hb_005023_010 Hb_005023_010 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_000107_200 Hb_000107_200 Hb_001018_130--Hb_000107_200 Hb_001018_130--Hb_000146_050 Hb_001018_110 Hb_001018_110 Hb_001018_130--Hb_001018_110 Hb_002445_120 Hb_002445_120 Hb_001018_130--Hb_002445_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8989 4.46129 4.35182 12.7742 8.65284 11.917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.78536 6.80724 8.7968 7.43218 5.8134

CAGE analysis