Hb_000808_280

Information

Type -
Description -
Location Contig808: 288217-290445
Sequence    

Annotation

kegg
ID rcu:RCOM_1435150
description hypothetical protein
nr
ID XP_002512509.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59118: 288326-290452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000630_050 0.0591839973 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000085_160 0.0664939908 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
4 Hb_003693_070 0.0693630616 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
5 Hb_000083_250 0.0698578062 - - ring finger protein, putative [Ricinus communis]
6 Hb_000120_060 0.0700759628 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
7 Hb_000120_670 0.0701441882 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
8 Hb_106724_020 0.0728984263 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
9 Hb_005144_160 0.0737192622 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
10 Hb_005357_080 0.0745471396 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
11 Hb_002200_080 0.0775285243 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
12 Hb_001454_130 0.0778816349 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
13 Hb_003665_060 0.0794045799 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_007017_030 0.0818636396 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
15 Hb_000205_300 0.0823672905 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
16 Hb_000011_200 0.0834660172 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
17 Hb_001946_010 0.0836775635 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_001638_170 0.0840721343 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
19 Hb_000019_030 0.0841246969 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
20 Hb_000035_320 0.0845377986 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_280 Hb_000808_280 Hb_000630_050 Hb_000630_050 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_003693_070 Hb_003693_070 Hb_000808_280--Hb_003693_070 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000120_060 Hb_000120_060 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_106724_020 Hb_106724_020 Hb_000630_050--Hb_106724_020 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000085_160--Hb_000011_200 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_003693_070--Hb_000120_060 Hb_010142_030 Hb_010142_030 Hb_003693_070--Hb_010142_030 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_001454_130 Hb_001454_130 Hb_000083_250--Hb_001454_130 Hb_000083_250--Hb_000630_050 Hb_007904_160 Hb_007904_160 Hb_000083_250--Hb_007904_160 Hb_000146_050 Hb_000146_050 Hb_000083_250--Hb_000146_050 Hb_001018_130 Hb_001018_130 Hb_000083_250--Hb_001018_130 Hb_000270_490 Hb_000270_490 Hb_000120_060--Hb_000270_490 Hb_000120_060--Hb_010142_030 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4724 14.8938 11.7263 29.7738 25.5598 29.9147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6806 24.4888 21.9941 22.9567 14.7604

CAGE analysis