Hb_003693_070

Information

Type -
Description -
Location Contig3693: 83879-92242
Sequence    

Annotation

kegg
ID rcu:RCOM_1763070
description alcohol dehydrogenase, putative (EC:1.1.1.1)
nr
ID XP_012086482.1
description PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
swissprot
ID A4YGN0
description Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1424 PE=1 SV=1
trembl
ID A0A067JP75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23962 PE=4 SV=1
Gene Ontology
ID GO:0005739
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38007: 84198-92176 , PASA_asmbl_38008: 84509-91184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003693_070 0.0 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
2 Hb_000120_060 0.054736454 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
3 Hb_010142_030 0.0576541002 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000808_280 0.0693630616 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004046_050 0.0709736383 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
6 Hb_000205_300 0.0711877334 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
7 Hb_000019_030 0.0720810301 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
8 Hb_003376_330 0.0751531475 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
9 Hb_000603_150 0.0755655052 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
10 Hb_000270_490 0.0769005731 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
11 Hb_001635_090 0.0771315456 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
12 Hb_005357_080 0.0774277956 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
13 Hb_158062_010 0.0785018165 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
14 Hb_000120_670 0.0787471666 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
15 Hb_000630_050 0.0791545322 - - conserved hypothetical protein [Ricinus communis]
16 Hb_073973_100 0.0817794604 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
17 Hb_001575_090 0.0823515896 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
18 Hb_001946_010 0.0827304343 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_002685_110 0.0834017003 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
20 Hb_106724_020 0.0837588736 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003693_070 Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_003693_070--Hb_000120_060 Hb_010142_030 Hb_010142_030 Hb_003693_070--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_000270_490 Hb_000270_490 Hb_000120_060--Hb_000270_490 Hb_000120_060--Hb_010142_030 Hb_000120_060--Hb_000808_280 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240 Hb_000023_280 Hb_000023_280 Hb_010142_030--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_010142_030--Hb_000116_410 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090 Hb_000630_050 Hb_000630_050 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_000020_150 Hb_000020_150 Hb_004046_050--Hb_000020_150 Hb_000345_380 Hb_000345_380 Hb_004046_050--Hb_000345_380 Hb_000039_220 Hb_000039_220 Hb_004046_050--Hb_000039_220 Hb_006827_020 Hb_006827_020 Hb_004046_050--Hb_006827_020 Hb_001221_100 Hb_001221_100 Hb_004046_050--Hb_001221_100 Hb_000603_150 Hb_000603_150 Hb_000205_300--Hb_000603_150 Hb_004310_020 Hb_004310_020 Hb_000205_300--Hb_004310_020 Hb_158062_010 Hb_158062_010 Hb_000205_300--Hb_158062_010 Hb_000205_300--Hb_000120_670 Hb_010712_030 Hb_010712_030 Hb_000205_300--Hb_010712_030 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2222 14.8484 15.5927 27.3929 21.3358 29.0131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.027 20.4758 22.0826 27.0444 9.00775

CAGE analysis