Hb_000020_150

Information

Type -
Description -
Location Contig20: 280437-283573
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08830g
description POPTRDRAFT_416625; hypothetical protein
nr
ID XP_012074975.1
description PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
swissprot
ID Q5AYT7
description Hsp70 nucleotide exchange factor fes1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fes1 PE=3 SV=1
trembl
ID A0A067KV00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09102 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20157: 280311-281333 , PASA_asmbl_20158: 281609-283189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_150 0.0 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
2 Hb_028872_090 0.0659294645 - - PREDICTED: urease [Jatropha curcas]
3 Hb_000120_430 0.0670075031 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
4 Hb_063716_100 0.0694399668 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
5 Hb_000221_250 0.0706618344 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
6 Hb_033834_030 0.0706730226 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
7 Hb_183612_040 0.0733292002 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
8 Hb_000163_220 0.0733336893 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
9 Hb_005337_090 0.0734932038 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
10 Hb_000005_220 0.0736965876 - - DNA ligase 1, partial [Glycine soja]
11 Hb_000351_120 0.0742405703 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
12 Hb_002784_020 0.0751567991 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
13 Hb_005588_090 0.0753715445 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
14 Hb_003549_150 0.0753930066 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
15 Hb_004046_050 0.0759590711 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
16 Hb_000302_310 0.0760955125 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
17 Hb_001214_060 0.0763543388 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
18 Hb_001635_090 0.0764124527 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
19 Hb_000089_120 0.0785147636 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_001946_010 0.0788141048 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000020_150 Hb_000020_150 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_000020_150--Hb_000120_430 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_033834_030 Hb_033834_030 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_000163_220 Hb_000163_220 Hb_028872_090--Hb_000163_220 Hb_002784_020 Hb_002784_020 Hb_028872_090--Hb_002784_020 Hb_028872_090--Hb_063716_100 Hb_000089_120 Hb_000089_120 Hb_028872_090--Hb_000089_120 Hb_003861_050 Hb_003861_050 Hb_028872_090--Hb_003861_050 Hb_004631_180 Hb_004631_180 Hb_000120_430--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_000120_430--Hb_001051_080 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_000120_430--Hb_033834_030 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180 Hb_003097_170 Hb_003097_170 Hb_000221_250--Hb_003097_170 Hb_011716_070 Hb_011716_070 Hb_000221_250--Hb_011716_070 Hb_001860_030 Hb_001860_030 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_000005_220 Hb_000005_220 Hb_183612_040--Hb_000005_220 Hb_001089_110 Hb_001089_110 Hb_183612_040--Hb_001089_110 Hb_002684_040 Hb_002684_040 Hb_183612_040--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_183612_040--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_183612_040--Hb_003878_110 Hb_079526_030 Hb_079526_030 Hb_183612_040--Hb_079526_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70496 8.11936 8.94117 8.0875 10.3673 10.9889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7207 7.87799 5.34862 11.1712 4.23986

CAGE analysis