Hb_000351_120

Information

Type -
Description -
Location Contig351: 132159-154252
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10290g
description hypothetical protein
nr
ID XP_006376153.1
description hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
swissprot
ID O80543
description Putative methyltransferase At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2
trembl
ID U5FSD7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36511: 132179-133225 , PASA_asmbl_36513: 137419-149948 , PASA_asmbl_36515: 150100-153883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000351_120 0.0 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
2 Hb_063716_100 0.0624404653 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
3 Hb_001433_070 0.068748661 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
4 Hb_005337_090 0.0711427068 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_000020_150 0.0742405703 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
6 Hb_002684_040 0.0758736806 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
7 Hb_002110_230 0.078865142 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_001143_180 0.0808485715 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
9 Hb_001089_110 0.0831720946 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009545_080 0.0836682641 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
11 Hb_000005_220 0.0836965957 - - DNA ligase 1, partial [Glycine soja]
12 Hb_003878_110 0.0837183987 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
13 Hb_000445_050 0.0849455219 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
14 Hb_000109_210 0.0854003046 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_002309_010 0.0855109805 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
16 Hb_004046_050 0.0856201161 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
17 Hb_000575_040 0.0864698933 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
18 Hb_183612_040 0.0872106355 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
19 Hb_028872_090 0.0873009651 - - PREDICTED: urease [Jatropha curcas]
20 Hb_000230_560 0.0881072769 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]

Gene co-expression network

sample Hb_000351_120 Hb_000351_120 Hb_063716_100 Hb_063716_100 Hb_000351_120--Hb_063716_100 Hb_001433_070 Hb_001433_070 Hb_000351_120--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_000351_120--Hb_005337_090 Hb_000020_150 Hb_000020_150 Hb_000351_120--Hb_000020_150 Hb_002684_040 Hb_002684_040 Hb_000351_120--Hb_002684_040 Hb_002110_230 Hb_002110_230 Hb_000351_120--Hb_002110_230 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_000020_150--Hb_000120_430 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_000020_150--Hb_033834_030 Hb_000020_150--Hb_183612_040 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_002684_040--Hb_183612_040 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_005618_050 Hb_005618_050 Hb_002110_230--Hb_005618_050 Hb_002918_030 Hb_002918_030 Hb_002110_230--Hb_002918_030 Hb_002110_230--Hb_063716_100 Hb_001040_100 Hb_001040_100 Hb_002110_230--Hb_001040_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73907 2.30689 4.89306 2.88636 4.32872 5.52995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88377 3.00925 2.48375 4.15504 1.98969

CAGE analysis