Hb_005618_050

Information

Type -
Description -
Location Contig5618: 47314-50342
Sequence    

Annotation

kegg
ID rcu:RCOM_1343110
description Protein CHMP7, putative
nr
ID XP_012083023.1
description PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q8WUX9
description Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1 SV=1
trembl
ID A0A067JZZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14124 PE=4 SV=1
Gene Ontology
ID GO:0007034
description charged multivesicular body protein 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48819: 47441-48592 , PASA_asmbl_48820: 47347-47641 , PASA_asmbl_48821: 49351-49945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_050 0.0 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
2 Hb_005588_090 0.0677491721 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
3 Hb_002110_230 0.0759928385 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_123915_040 0.0800200334 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
5 Hb_000035_470 0.0801391109 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
6 Hb_003375_070 0.080707413 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
7 Hb_002073_190 0.0808697688 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
8 Hb_000163_220 0.0809635526 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
9 Hb_008103_070 0.0819324865 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
10 Hb_002681_090 0.0826821327 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
11 Hb_002092_130 0.0827909843 - - PREDICTED: protein CASP-like [Oryza brachyantha]
12 Hb_001214_060 0.0829613355 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
13 Hb_002301_300 0.0833907623 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
14 Hb_004267_040 0.083518276 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
15 Hb_000302_310 0.0859928233 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
16 Hb_033642_090 0.0884902231 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000020_150 0.0886175424 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
18 Hb_001089_070 0.0888221792 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
19 Hb_000317_470 0.0890459797 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
20 Hb_000120_280 0.0895752227 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]

Gene co-expression network

sample Hb_005618_050 Hb_005618_050 Hb_005588_090 Hb_005588_090 Hb_005618_050--Hb_005588_090 Hb_002110_230 Hb_002110_230 Hb_005618_050--Hb_002110_230 Hb_123915_040 Hb_123915_040 Hb_005618_050--Hb_123915_040 Hb_000035_470 Hb_000035_470 Hb_005618_050--Hb_000035_470 Hb_003375_070 Hb_003375_070 Hb_005618_050--Hb_003375_070 Hb_002073_190 Hb_002073_190 Hb_005618_050--Hb_002073_190 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_001433_070 Hb_001433_070 Hb_002110_230--Hb_001433_070 Hb_000351_120 Hb_000351_120 Hb_002110_230--Hb_000351_120 Hb_002918_030 Hb_002918_030 Hb_002110_230--Hb_002918_030 Hb_063716_100 Hb_063716_100 Hb_002110_230--Hb_063716_100 Hb_001040_100 Hb_001040_100 Hb_002110_230--Hb_001040_100 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150 Hb_004319_080 Hb_004319_080 Hb_000035_470--Hb_004319_080 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_000035_470--Hb_001021_150 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140 Hb_001135_220 Hb_001135_220 Hb_003375_070--Hb_001135_220 Hb_000139_370 Hb_000139_370 Hb_003375_070--Hb_000139_370 Hb_011930_160 Hb_011930_160 Hb_003375_070--Hb_011930_160 Hb_002273_120 Hb_002273_120 Hb_003375_070--Hb_002273_120 Hb_003025_110 Hb_003025_110 Hb_003375_070--Hb_003025_110 Hb_007632_240 Hb_007632_240 Hb_003375_070--Hb_007632_240 Hb_002073_190--Hb_015807_050 Hb_000035_110 Hb_000035_110 Hb_002073_190--Hb_000035_110 Hb_000000_150 Hb_000000_150 Hb_002073_190--Hb_000000_150 Hb_001377_310 Hb_001377_310 Hb_002073_190--Hb_001377_310 Hb_002272_130 Hb_002272_130 Hb_002073_190--Hb_002272_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1343 6.27062 8.84997 8.71579 13.364 8.33649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.10404 7.96096 4.32108 11.5883 7.19233

CAGE analysis