Hb_001821_160

Information

Type -
Description -
Location Contig1821: 208011-212822
Sequence    

Annotation

kegg
ID rcu:RCOM_0460560
description serine/arginine rich splicing factor, putative
nr
ID XP_002531488.1
description serine/arginine rich splicing factor, putative [Ricinus communis]
swissprot
ID Q9FMG4
description Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1
trembl
ID B9SZR9
description Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0460560 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine arginine rich splicing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17748: 208025-211290 , PASA_asmbl_17749: 208025-212218 , PASA_asmbl_17750: 212267-212782
cDNA
(Sanger)
(ID:Location)		 009_N24.ab1: 208031-210850 , 021_N13.ab1: 208027-210742

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_160 0.0 - - serine/arginine rich splicing factor, putative [Ricinus communis]
2 Hb_004785_100 0.0556876751 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000331_110 0.0633956663 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
4 Hb_079526_030 0.0634148181 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
5 Hb_012753_170 0.0637866842 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
6 Hb_005588_090 0.0656537968 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
7 Hb_022256_060 0.0671428136 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
8 Hb_001006_330 0.0710939842 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
9 Hb_000260_680 0.0714024721 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
10 Hb_027472_120 0.0728902029 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001433_070 0.0729656641 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
12 Hb_002835_230 0.0729916328 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_002217_110 0.0733502748 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
14 Hb_003861_050 0.0734321329 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
15 Hb_132840_010 0.0737765519 - - serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_000160_350 0.076029585 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
17 Hb_001153_210 0.0760934603 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
18 Hb_008887_020 0.0764559904 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
19 Hb_005289_040 0.0767102978 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_004912_030 0.0770291696 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]

Gene co-expression network

sample Hb_001821_160 Hb_001821_160 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_079526_030--Hb_001089_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_079526_030--Hb_003878_110 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_008103_070 Hb_008103_070 Hb_012753_170--Hb_008103_070 Hb_012753_170--Hb_004785_100 Hb_012753_170--Hb_006960_050 Hb_012753_170--Hb_001433_070 Hb_002175_030 Hb_002175_030 Hb_012753_170--Hb_002175_030 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_008887_020 Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_000679_340 Hb_000679_340 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_000230_090 Hb_000230_090 Hb_022256_060--Hb_000230_090 Hb_022256_060--Hb_000160_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.339 91.7475 119.44 68.2227 140.927 92.2195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.3837 84.0724 53.8846 83.2779 87.7543

CAGE analysis