Hb_008103_070

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig8103: 63905-67015
Sequence    

Annotation

kegg
ID rcu:RCOM_1047670
description DNA binding protein, putative
nr
ID XP_012076950.1
description PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
swissprot
ID F4I7L1
description Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2
trembl
ID A0A067KFT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07419 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59228: 63919-66962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_070 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
2 Hb_012753_170 0.0610395978 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
3 Hb_002890_120 0.0663502294 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
4 Hb_001433_070 0.0667482798 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
5 Hb_005588_090 0.0694305622 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
6 Hb_002175_030 0.0716249854 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
7 Hb_032202_120 0.0734441888 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
8 Hb_027760_080 0.0776371634 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001089_110 0.0777361894 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000334_270 0.0780230111 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_001821_160 0.0797720702 - - serine/arginine rich splicing factor, putative [Ricinus communis]
12 Hb_010068_040 0.079977405 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
13 Hb_002652_030 0.0811360472 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
14 Hb_183612_040 0.0816636667 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
15 Hb_002835_230 0.0818058698 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_005618_050 0.0819324865 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
17 Hb_079526_030 0.0819877012 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
18 Hb_002783_310 0.0835363616 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
19 Hb_004785_100 0.0839455408 - - conserved hypothetical protein [Ricinus communis]
20 Hb_164544_010 0.0845674812 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008103_070 Hb_008103_070 Hb_012753_170 Hb_012753_170 Hb_008103_070--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_008103_070--Hb_002890_120 Hb_001433_070 Hb_001433_070 Hb_008103_070--Hb_001433_070 Hb_005588_090 Hb_005588_090 Hb_008103_070--Hb_005588_090 Hb_002175_030 Hb_002175_030 Hb_008103_070--Hb_002175_030 Hb_032202_120 Hb_032202_120 Hb_008103_070--Hb_032202_120 Hb_001821_160 Hb_001821_160 Hb_012753_170--Hb_001821_160 Hb_004785_100 Hb_004785_100 Hb_012753_170--Hb_004785_100 Hb_006960_050 Hb_006960_050 Hb_012753_170--Hb_006960_050 Hb_012753_170--Hb_001433_070 Hb_012753_170--Hb_002175_030 Hb_000648_080 Hb_000648_080 Hb_002890_120--Hb_000648_080 Hb_000236_400 Hb_000236_400 Hb_002890_120--Hb_000236_400 Hb_002890_120--Hb_032202_120 Hb_000398_020 Hb_000398_020 Hb_002890_120--Hb_000398_020 Hb_000710_040 Hb_000710_040 Hb_002890_120--Hb_000710_040 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_005588_090--Hb_001821_160 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_032202_120--Hb_001433_070 Hb_032202_120--Hb_005289_040 Hb_032202_120--Hb_012753_170 Hb_032202_120--Hb_005588_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6591 18.1046 16.1988 11.1709 26.1744 19.3456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6146 18.0825 7.40845 21.2214 12.6864

CAGE analysis