Hb_000236_400

Information

Type -
Description -
Location Contig236: 290814-295914
Sequence    

Annotation

kegg
ID rcu:RCOM_0522880
description hypothetical protein
nr
ID KDP39301.1
description hypothetical protein JCGZ_01058 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01058 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24716: 290840-291834 , PASA_asmbl_24717: 291835-296033
cDNA
(Sanger)
(ID:Location)		 041_B11.ab1: 295487-295598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_400 0.0 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
2 Hb_000710_040 0.0721434883 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
3 Hb_002890_120 0.0743888553 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
4 Hb_000648_080 0.0744334446 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
5 Hb_000398_020 0.0754567978 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
6 Hb_000011_100 0.0921522105 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
7 Hb_003943_010 0.0939235281 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000527_010 0.096221103 - - katanin P80 subunit, putative [Ricinus communis]
9 Hb_001085_110 0.0972406483 - - T6D22.2 [Arabidopsis thaliana]
10 Hb_004976_010 0.0978778481 - - hypothetical protein RCOM_1429110 [Ricinus communis]
11 Hb_001377_160 0.0983161983 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
12 Hb_002311_290 0.0987401437 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
13 Hb_003943_020 0.0992295111 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
14 Hb_011609_140 0.100494537 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
15 Hb_002849_170 0.1006578601 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
16 Hb_000227_220 0.1011004054 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
17 Hb_002000_070 0.1011662273 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
18 Hb_000862_040 0.1014670772 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_001089_030 0.1015912349 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
20 Hb_000318_120 0.1015945437 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_400 Hb_000236_400 Hb_000710_040 Hb_000710_040 Hb_000236_400--Hb_000710_040 Hb_002890_120 Hb_002890_120 Hb_000236_400--Hb_002890_120 Hb_000648_080 Hb_000648_080 Hb_000236_400--Hb_000648_080 Hb_000398_020 Hb_000398_020 Hb_000236_400--Hb_000398_020 Hb_000011_100 Hb_000011_100 Hb_000236_400--Hb_000011_100 Hb_003943_010 Hb_003943_010 Hb_000236_400--Hb_003943_010 Hb_000710_040--Hb_000011_100 Hb_001089_030 Hb_001089_030 Hb_000710_040--Hb_001089_030 Hb_000227_220 Hb_000227_220 Hb_000710_040--Hb_000227_220 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_002890_120--Hb_000648_080 Hb_008103_070 Hb_008103_070 Hb_002890_120--Hb_008103_070 Hb_032202_120 Hb_032202_120 Hb_002890_120--Hb_032202_120 Hb_002890_120--Hb_000398_020 Hb_002890_120--Hb_000710_040 Hb_000648_080--Hb_000398_020 Hb_140049_040 Hb_140049_040 Hb_000648_080--Hb_140049_040 Hb_000640_310 Hb_000640_310 Hb_000648_080--Hb_000640_310 Hb_000406_230 Hb_000406_230 Hb_000648_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000648_080--Hb_000264_030 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000398_020--Hb_000406_230 Hb_002000_070 Hb_002000_070 Hb_000398_020--Hb_002000_070 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_003943_010--Hb_000227_220 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61942 5.68315 3.40617 4.29812 4.47683 3.45839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91711 3.54383 1.03066 5.34519 3.924

CAGE analysis