Hb_002000_070

Information

Type -
Description -
Location Contig2000: 31246-33523
Sequence    

Annotation

kegg
ID rcu:RCOM_0959760
description catalytic, putative
nr
ID XP_012073962.1
description PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
swissprot
ID Q9SRE0
description 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 OS=Arabidopsis thaliana GN=COG0212 PE=2 SV=1
trembl
ID B9SE88
description Catalytic, putative OS=Ricinus communis GN=RCOM_0959760 PE=4 SV=1
Gene Ontology
ID GO:0009507
description 5-formyltetrahydrofolate cyclo-ligase-like protein cog0212

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20243: 31114-33572 , PASA_asmbl_20245: 32325-32555 , PASA_asmbl_20247: 34133-41246 , PASA_asmbl_20248: 34133-41246
cDNA
(Sanger)
(ID:Location)		 023_F08.ab1: 32633-33572

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
2 Hb_029977_040 0.0734753013 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
3 Hb_001617_040 0.0749682259 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000398_020 0.0753651821 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
5 Hb_000025_710 0.0799889657 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_000679_330 0.0801241758 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_000003_190 0.0806888967 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
8 Hb_011537_050 0.0825623188 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
9 Hb_003470_080 0.0839637766 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
10 Hb_000329_370 0.0888959543 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
11 Hb_001080_230 0.0899860448 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
12 Hb_001614_060 0.0919235653 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
13 Hb_002085_030 0.0928581564 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
14 Hb_002872_040 0.0940202915 - - pumilio, putative [Ricinus communis]
15 Hb_001191_120 0.0947919372 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
16 Hb_000648_080 0.0960992283 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_000170_150 0.0964802911 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
18 Hb_027760_080 0.0985429626 - - cytochrome P450, putative [Ricinus communis]
19 Hb_012305_030 0.0993531209 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
20 Hb_000099_040 0.0995275295 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002000_070 Hb_002000_070 Hb_029977_040 Hb_029977_040 Hb_002000_070--Hb_029977_040 Hb_001617_040 Hb_001617_040 Hb_002000_070--Hb_001617_040 Hb_000398_020 Hb_000398_020 Hb_002000_070--Hb_000398_020 Hb_000025_710 Hb_000025_710 Hb_002000_070--Hb_000025_710 Hb_000679_330 Hb_000679_330 Hb_002000_070--Hb_000679_330 Hb_000003_190 Hb_000003_190 Hb_002000_070--Hb_000003_190 Hb_000099_040 Hb_000099_040 Hb_029977_040--Hb_000099_040 Hb_002768_050 Hb_002768_050 Hb_029977_040--Hb_002768_050 Hb_029977_040--Hb_001617_040 Hb_004976_010 Hb_004976_010 Hb_029977_040--Hb_004976_010 Hb_001279_120 Hb_001279_120 Hb_029977_040--Hb_001279_120 Hb_005542_140 Hb_005542_140 Hb_029977_040--Hb_005542_140 Hb_001617_040--Hb_001279_120 Hb_007810_110 Hb_007810_110 Hb_001617_040--Hb_007810_110 Hb_003120_080 Hb_003120_080 Hb_001617_040--Hb_003120_080 Hb_002217_250 Hb_002217_250 Hb_001617_040--Hb_002217_250 Hb_000648_080 Hb_000648_080 Hb_000398_020--Hb_000648_080 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000406_230 Hb_000406_230 Hb_000398_020--Hb_000406_230 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_000398_020--Hb_004976_010 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_000025_710--Hb_005542_140 Hb_000679_330--Hb_188063_010 Hb_000679_330--Hb_000025_710 Hb_000679_330--Hb_002333_050 Hb_000679_330--Hb_000398_020 Hb_001959_020 Hb_001959_020 Hb_000679_330--Hb_001959_020 Hb_001080_230 Hb_001080_230 Hb_000003_190--Hb_001080_230 Hb_000092_020 Hb_000092_020 Hb_000003_190--Hb_000092_020 Hb_003470_080 Hb_003470_080 Hb_000003_190--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_000003_190--Hb_002872_040 Hb_000395_130 Hb_000395_130 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.41023 13.2139 5.13105 4.73192 8.02515 6.09981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.33294 5.29922 3.07473 7.95254 9.3847

CAGE analysis