Hb_001617_040

Information

Type -
Description -
Location Contig1617: 21640-25443
Sequence    

Annotation

kegg
ID rcu:RCOM_0905060
description Protein sufB, putative
nr
ID AIU41658.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZS97
description UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1
trembl
ID A0A097P9T6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI8 PE=2 SV=1
Gene Ontology
ID GO:0005524
description upf0051 protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14505: 21625-25429 , PASA_asmbl_14506: 21688-25429
cDNA
(Sanger)
(ID:Location)		 010_I06.ab1: 24620-25324 , 049_K04.ab1: 24750-25429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001617_040 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_029977_040 0.0637893648 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
3 Hb_002000_070 0.0749682259 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
4 Hb_001279_120 0.0785581856 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
5 Hb_007810_110 0.0820183845 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
6 Hb_003120_080 0.0900891755 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
7 Hb_002217_250 0.0909037991 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000453_250 0.0915672746 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
9 Hb_003470_080 0.0917002243 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
10 Hb_001668_010 0.0920535752 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
11 Hb_000099_040 0.0923363452 - - unnamed protein product [Coffea canephora]
12 Hb_000003_190 0.0928264202 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
13 Hb_004143_100 0.0930045904 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004586_290 0.0935326492 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
15 Hb_003943_010 0.0945409098 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000710_040 0.0949519018 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
17 Hb_000069_470 0.095278086 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
18 Hb_001089_050 0.0964099006 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
19 Hb_133702_020 0.0966917876 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001545_150 0.0967304142 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]

Gene co-expression network

sample Hb_001617_040 Hb_001617_040 Hb_029977_040 Hb_029977_040 Hb_001617_040--Hb_029977_040 Hb_002000_070 Hb_002000_070 Hb_001617_040--Hb_002000_070 Hb_001279_120 Hb_001279_120 Hb_001617_040--Hb_001279_120 Hb_007810_110 Hb_007810_110 Hb_001617_040--Hb_007810_110 Hb_003120_080 Hb_003120_080 Hb_001617_040--Hb_003120_080 Hb_002217_250 Hb_002217_250 Hb_001617_040--Hb_002217_250 Hb_000099_040 Hb_000099_040 Hb_029977_040--Hb_000099_040 Hb_002768_050 Hb_002768_050 Hb_029977_040--Hb_002768_050 Hb_004976_010 Hb_004976_010 Hb_029977_040--Hb_004976_010 Hb_029977_040--Hb_001279_120 Hb_005542_140 Hb_005542_140 Hb_029977_040--Hb_005542_140 Hb_002000_070--Hb_029977_040 Hb_000398_020 Hb_000398_020 Hb_002000_070--Hb_000398_020 Hb_000025_710 Hb_000025_710 Hb_002000_070--Hb_000025_710 Hb_000679_330 Hb_000679_330 Hb_002000_070--Hb_000679_330 Hb_000003_190 Hb_000003_190 Hb_002000_070--Hb_000003_190 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_031042_050 Hb_031042_050 Hb_007810_110--Hb_031042_050 Hb_008253_020 Hb_008253_020 Hb_007810_110--Hb_008253_020 Hb_004129_070 Hb_004129_070 Hb_007810_110--Hb_004129_070 Hb_007810_110--Hb_001279_120 Hb_002276_240 Hb_002276_240 Hb_007810_110--Hb_002276_240 Hb_159558_010 Hb_159558_010 Hb_007810_110--Hb_159558_010 Hb_001377_160 Hb_001377_160 Hb_003120_080--Hb_001377_160 Hb_004586_290 Hb_004586_290 Hb_003120_080--Hb_004586_290 Hb_004143_100 Hb_004143_100 Hb_003120_080--Hb_004143_100 Hb_000402_230 Hb_000402_230 Hb_003120_080--Hb_000402_230 Hb_011849_040 Hb_011849_040 Hb_003120_080--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_003120_080--Hb_000009_500 Hb_007645_100 Hb_007645_100 Hb_002217_250--Hb_007645_100 Hb_002263_020 Hb_002263_020 Hb_002217_250--Hb_002263_020 Hb_000347_430 Hb_000347_430 Hb_002217_250--Hb_000347_430 Hb_003517_040 Hb_003517_040 Hb_002217_250--Hb_003517_040 Hb_002732_040 Hb_002732_040 Hb_002217_250--Hb_002732_040 Hb_000340_530 Hb_000340_530 Hb_002217_250--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0485 49.1629 20.057 29.1709 31.5855 18.4074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1737 20.5061 16.5372 27.2128 36.6607

CAGE analysis