Hb_001959_020

Information

Type -
Description -
Location Contig1959: 32477-45838
Sequence    

Annotation

kegg
ID rcu:RCOM_1023960
description triacylglycerol lipase, putative
nr
ID XP_012077651.1
description PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
swissprot
ID Q0CBM7
description Probable feruloyl esterase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=faeA PE=3 SV=1
trembl
ID A0A067KAW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12910 PE=4 SV=1
Gene Ontology
ID GO:0016787
description triglyceride lipases isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19616: 35012-39800 , PASA_asmbl_19617: 40536-40885 , PASA_asmbl_19618: 41118-41308 , PASA_asmbl_19619: 41320-43953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_020 0.0 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
2 Hb_000176_100 0.0523902819 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
3 Hb_000949_010 0.0607986975 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_003581_170 0.0617592752 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
5 Hb_000661_200 0.0648035903 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
6 Hb_000069_410 0.0709532845 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
7 Hb_128743_010 0.0712222541 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_023226_080 0.0718417083 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
9 Hb_003284_030 0.0736052286 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
10 Hb_000025_710 0.074661754 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
11 Hb_188063_010 0.0777366729 - - hypothetical protein RCOM_1469330 [Ricinus communis]
12 Hb_005542_140 0.0797696125 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
13 Hb_002333_050 0.0797962107 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
14 Hb_001191_120 0.0803486481 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
15 Hb_097218_010 0.0810770117 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
16 Hb_001235_230 0.0812318977 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
17 Hb_007558_070 0.0823256218 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
18 Hb_011947_050 0.0823459964 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
19 Hb_000025_320 0.0832366372 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
20 Hb_052764_060 0.0837110578 - - XPA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001959_020 Hb_001959_020 Hb_000176_100 Hb_000176_100 Hb_001959_020--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_001959_020--Hb_000949_010 Hb_003581_170 Hb_003581_170 Hb_001959_020--Hb_003581_170 Hb_000661_200 Hb_000661_200 Hb_001959_020--Hb_000661_200 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410 Hb_128743_010 Hb_128743_010 Hb_001959_020--Hb_128743_010 Hb_000176_100--Hb_000949_010 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_003284_030 Hb_003284_030 Hb_000949_010--Hb_003284_030 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000949_010--Hb_003581_170 Hb_174865_020 Hb_174865_020 Hb_000949_010--Hb_174865_020 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_052764_060 Hb_052764_060 Hb_000661_200--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000661_200--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000661_200--Hb_007813_030 Hb_000062_470 Hb_000062_470 Hb_000661_200--Hb_000062_470 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_000069_410--Hb_001699_280 Hb_000069_410--Hb_000105_040 Hb_004108_100 Hb_004108_100 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_128743_010--Hb_144831_010 Hb_000960_100 Hb_000960_100 Hb_128743_010--Hb_000960_100 Hb_128743_010--Hb_000661_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72601 12.1009 4.11933 4.76599 9.68999 6.8384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27577 2.86963 3.86907 7.48974 6.94831

CAGE analysis