Hb_011947_050

Information

Type -
Description -
Location Contig11947: 18610-38148
Sequence    

Annotation

kegg
ID rcu:RCOM_0482820
description E3 ubiquitin protein ligase upl2, putative
nr
ID XP_002527362.1
description E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
swissprot
ID Q8H0T4
description E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3
trembl
ID B9SMZ3
description E3 ubiquitin protein ligase upl2, putative OS=Ricinus communis GN=RCOM_0482820 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05755: 18598-28803 , PASA_asmbl_05756: 24543-28803 , PASA_asmbl_05757: 28804-37886 , PASA_asmbl_05758: 35227-35428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011947_050 0.0 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
2 Hb_174865_020 0.0392970863 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
3 Hb_000949_010 0.0519327199 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_003284_030 0.0713144364 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
5 Hb_003211_040 0.0728653831 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
6 Hb_007576_210 0.0739618726 - - PREDICTED: protein furry homolog [Jatropha curcas]
7 Hb_002333_050 0.0757006593 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
8 Hb_001699_280 0.0759300625 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
9 Hb_003581_170 0.0764374578 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
10 Hb_011828_030 0.0779870107 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
11 Hb_188063_010 0.0784445594 - - hypothetical protein RCOM_1469330 [Ricinus communis]
12 Hb_000836_020 0.0813120812 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
13 Hb_000176_100 0.0822422064 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
14 Hb_001959_020 0.0823459964 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
15 Hb_009486_170 0.0851145691 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
16 Hb_002909_120 0.0866645869 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
17 Hb_018133_050 0.0871684588 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
18 Hb_005656_040 0.0877966489 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_002097_050 0.088125933 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
20 Hb_000046_180 0.0902637253 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]

Gene co-expression network

sample Hb_011947_050 Hb_011947_050 Hb_174865_020 Hb_174865_020 Hb_011947_050--Hb_174865_020 Hb_000949_010 Hb_000949_010 Hb_011947_050--Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_011947_050--Hb_003284_030 Hb_003211_040 Hb_003211_040 Hb_011947_050--Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_011947_050--Hb_007576_210 Hb_002333_050 Hb_002333_050 Hb_011947_050--Hb_002333_050 Hb_174865_020--Hb_000949_010 Hb_174865_020--Hb_003284_030 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_018133_050 Hb_018133_050 Hb_174865_020--Hb_018133_050 Hb_000949_010--Hb_003284_030 Hb_000176_100 Hb_000176_100 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_004884_150 Hb_004884_150 Hb_003284_030--Hb_004884_150 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230 Hb_003284_030--Hb_018133_050 Hb_003211_040--Hb_007576_210 Hb_002095_070 Hb_002095_070 Hb_003211_040--Hb_002095_070 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_007576_210--Hb_009486_170 Hb_014497_020 Hb_014497_020 Hb_007576_210--Hb_014497_020 Hb_001699_280 Hb_001699_280 Hb_007576_210--Hb_001699_280 Hb_007632_010 Hb_007632_010 Hb_007576_210--Hb_007632_010 Hb_007576_210--Hb_002333_050 Hb_188063_010 Hb_188063_010 Hb_002333_050--Hb_188063_010 Hb_002333_050--Hb_009486_170 Hb_002333_050--Hb_002909_120 Hb_000025_710 Hb_000025_710 Hb_002333_050--Hb_000025_710 Hb_002333_050--Hb_001699_280 Hb_000665_230 Hb_000665_230 Hb_002333_050--Hb_000665_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81537 31.9091 6.26794 11.6491 20.5813 18.8618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43752 6.43222 9.78743 18.3756 18.8579

CAGE analysis