Hb_000174_290

Information

Type -
Description -
Location Contig174: 325117-340496
Sequence    

Annotation

kegg
ID rcu:RCOM_1076580
description hypothetical protein
nr
ID XP_012078918.1
description PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
swissprot
ID Q9Z160
description Conserved oligomeric Golgi complex subunit 1 OS=Mus musculus GN=Cog1 PE=1 SV=3
trembl
ID A0A067K8B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13416 PE=4 SV=1
Gene Ontology
ID GO:0005794
description conserved oligomeric golgi complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16585: 337240-340543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_290 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
2 Hb_003729_030 0.0718340874 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
3 Hb_001235_230 0.0731047145 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
4 Hb_004410_120 0.0741845797 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
5 Hb_000005_070 0.0771973625 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
6 Hb_019430_020 0.078896677 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
7 Hb_001322_130 0.0798160059 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
8 Hb_013358_010 0.079988719 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
9 Hb_174865_020 0.0801024683 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
10 Hb_000176_100 0.0802382178 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
11 Hb_000260_070 0.0809461006 - - kinase, putative [Ricinus communis]
12 Hb_000321_150 0.0830713748 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
13 Hb_000665_230 0.0835191495 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
14 Hb_008053_040 0.083923776 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
15 Hb_128743_010 0.0846902758 - - RNA-binding protein, putative [Ricinus communis]
16 Hb_000412_010 0.0854533878 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_005656_040 0.0861365148 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_000949_010 0.0863681691 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
19 Hb_031042_050 0.0864526613 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
20 Hb_002260_050 0.0879617107 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000174_290 Hb_000174_290 Hb_003729_030 Hb_003729_030 Hb_000174_290--Hb_003729_030 Hb_001235_230 Hb_001235_230 Hb_000174_290--Hb_001235_230 Hb_004410_120 Hb_004410_120 Hb_000174_290--Hb_004410_120 Hb_000005_070 Hb_000005_070 Hb_000174_290--Hb_000005_070 Hb_019430_020 Hb_019430_020 Hb_000174_290--Hb_019430_020 Hb_001322_130 Hb_001322_130 Hb_000174_290--Hb_001322_130 Hb_000321_150 Hb_000321_150 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_031042_050 Hb_031042_050 Hb_004410_120--Hb_031042_050 Hb_013358_010 Hb_013358_010 Hb_004410_120--Hb_013358_010 Hb_012055_040 Hb_012055_040 Hb_004410_120--Hb_012055_040 Hb_000037_220 Hb_000037_220 Hb_004410_120--Hb_000037_220 Hb_004410_120--Hb_001322_130 Hb_128743_010 Hb_128743_010 Hb_000005_070--Hb_128743_010 Hb_004079_060 Hb_004079_060 Hb_000005_070--Hb_004079_060 Hb_004108_100 Hb_004108_100 Hb_000005_070--Hb_004108_100 Hb_006117_080 Hb_006117_080 Hb_000005_070--Hb_006117_080 Hb_002233_100 Hb_002233_100 Hb_000005_070--Hb_002233_100 Hb_009767_080 Hb_009767_080 Hb_019430_020--Hb_009767_080 Hb_000661_130 Hb_000661_130 Hb_019430_020--Hb_000661_130 Hb_019430_020--Hb_001322_130 Hb_000665_230 Hb_000665_230 Hb_019430_020--Hb_000665_230 Hb_019430_020--Hb_000321_150 Hb_019430_020--Hb_002253_080 Hb_001322_130--Hb_002253_080 Hb_001322_130--Hb_031042_050 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22763 11.7115 3.59074 6.62811 9.09791 7.32496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33807 2.80372 6.43836 5.67833 7.85615

CAGE analysis