Hb_128743_010

Information

Type -
Description -
Location Contig128743: 2555-8795
Sequence    

Annotation

kegg
ID rcu:RCOM_0522060
description RNA-binding protein, putative
nr
ID XP_002522751.1
description RNA-binding protein, putative [Ricinus communis]
swissprot
ID F1QBY1
description Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
trembl
ID B9S9T2
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0522060 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cleavage and polyadenylation specificity factor subunit 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128743_010 0.0 - - RNA-binding protein, putative [Ricinus communis]
2 Hb_004108_100 0.0603105368 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
3 Hb_000025_320 0.0604536634 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
4 Hb_144831_010 0.0630546631 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
5 Hb_000960_100 0.068733226 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
6 Hb_000661_200 0.0706559077 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
7 Hb_001959_020 0.0712222541 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
8 Hb_000005_070 0.0725312824 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
9 Hb_000345_140 0.0731435405 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
10 Hb_000176_100 0.0759571894 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
11 Hb_000671_070 0.0767688703 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
12 Hb_006420_040 0.0769090779 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
13 Hb_001191_120 0.0791588098 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
14 Hb_000260_640 0.0792207151 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
15 Hb_002022_070 0.0814262334 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
16 Hb_052764_060 0.0814530773 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_002253_080 0.0816935611 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
18 Hb_001550_060 0.082382105 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
19 Hb_002615_090 0.0831756297 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_000174_290 0.0846902758 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_128743_010 Hb_128743_010 Hb_004108_100 Hb_004108_100 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_128743_010--Hb_144831_010 Hb_000960_100 Hb_000960_100 Hb_128743_010--Hb_000960_100 Hb_000661_200 Hb_000661_200 Hb_128743_010--Hb_000661_200 Hb_001959_020 Hb_001959_020 Hb_128743_010--Hb_001959_020 Hb_004108_100--Hb_000960_100 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000025_320--Hb_000960_100 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_003785_040 Hb_003785_040 Hb_144831_010--Hb_003785_040 Hb_144831_010--Hb_000960_100 Hb_001718_090 Hb_001718_090 Hb_144831_010--Hb_001718_090 Hb_000032_010 Hb_000032_010 Hb_144831_010--Hb_000032_010 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_000960_100--Hb_002022_070 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_052764_060 Hb_052764_060 Hb_000661_200--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000661_200--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000661_200--Hb_007813_030 Hb_000062_470 Hb_000062_470 Hb_000661_200--Hb_000062_470 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_000176_100 Hb_000176_100 Hb_001959_020--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_001959_020--Hb_000949_010 Hb_003581_170 Hb_003581_170 Hb_001959_020--Hb_003581_170 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80223 16.5564 6.39675 5.87653 15.9038 9.93553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84154 5.28281 8.26464 8.01159 9.64844

CAGE analysis