Hb_006816_430

Information

Type -
Description -
Location Contig6816: 260055-269418
Sequence    

Annotation

kegg
ID rcu:RCOM_1434170
description WD-repeat protein, putative
nr
ID XP_012088954.1
description PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q84JM4
description Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1
trembl
ID B9RFF4
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1434170 PE=4 SV=1
Gene Ontology
ID GO:0006355
description topless-related protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53846: 260045-266241 , PASA_asmbl_53848: 266486-266704 , PASA_asmbl_53849: 266770-269330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_430 0.0 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
2 Hb_004108_100 0.0645255519 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
3 Hb_003203_030 0.0735681084 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
4 Hb_000265_230 0.0736752952 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
5 Hb_001123_260 0.0759120835 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_027346_010 0.0759955649 - - -
7 Hb_004117_140 0.0764090282 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
8 Hb_000291_050 0.0789704518 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
9 Hb_005496_110 0.0793421345 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
10 Hb_005779_080 0.0818555061 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
11 Hb_001205_230 0.0846192719 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
12 Hb_000041_090 0.0851252273 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
13 Hb_003470_080 0.0858328595 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
14 Hb_001191_120 0.0869399954 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
15 Hb_018118_010 0.087913359 - - DNA polymerase I, putative [Ricinus communis]
16 Hb_000035_290 0.0888802986 - - RNA recognition motif-containing family protein [Populus trichocarpa]
17 Hb_021443_040 0.0890914235 - - acc synthase, putative [Ricinus communis]
18 Hb_000906_100 0.0894110396 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
19 Hb_000343_250 0.0895318949 - - PREDICTED: protein CASC3 [Jatropha curcas]
20 Hb_000753_200 0.0906130348 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_430 Hb_006816_430 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_003203_030 Hb_003203_030 Hb_006816_430--Hb_003203_030 Hb_000265_230 Hb_000265_230 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_000960_100 Hb_000960_100 Hb_004108_100--Hb_000960_100 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_000025_320 Hb_000025_320 Hb_004108_100--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_000788_070 Hb_000788_070 Hb_000265_230--Hb_000788_070 Hb_000265_230--Hb_018118_010 Hb_001191_120 Hb_001191_120 Hb_000265_230--Hb_001191_120 Hb_000025_710 Hb_000025_710 Hb_000265_230--Hb_000025_710 Hb_000265_230--Hb_003203_030 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_001123_260--Hb_005489_020 Hb_021443_040 Hb_021443_040 Hb_001123_260--Hb_021443_040 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070 Hb_001205_230 Hb_001205_230 Hb_027346_010--Hb_001205_230 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_009486_060 Hb_009486_060 Hb_027346_010--Hb_009486_060 Hb_000281_090 Hb_000281_090 Hb_027346_010--Hb_000281_090 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_004117_140--Hb_027346_010 Hb_004117_140--Hb_000291_050 Hb_004117_140--Hb_000281_090 Hb_000574_400 Hb_000574_400 Hb_004117_140--Hb_000574_400 Hb_004117_140--Hb_001205_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.742 21.3 9.97738 7.39115 17.4152 19.6482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6554 10.3467 12.4309 10.0342 22.4095

CAGE analysis