Hb_007943_110

Information

Type -
Description -
Location Contig7943: 93831-97725
Sequence    

Annotation

kegg
ID tcc:TCM_037850
description RNA-binding protein-related
nr
ID XP_012076726.1
description PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
swissprot
ID Q92804
description TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1
trembl
ID W9S109
description TATA-binding protein-associated factor 2N OS=Morus notabilis GN=L484_001933 PE=4 SV=1
Gene Ontology
ID GO:0008270
description rna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58468: 94422-94779 , PASA_asmbl_58470: 92149-97312 , PASA_asmbl_58473: 97364-97723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_110 0.0 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
2 Hb_014361_070 0.063496611 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
3 Hb_000060_090 0.0659257243 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
4 Hb_003371_110 0.0679530851 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
5 Hb_006882_020 0.0732590476 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003029_110 0.0742404023 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
7 Hb_006909_070 0.0743421371 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000166_130 0.0748046933 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005779_080 0.0753161829 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
10 Hb_007657_010 0.0759076004 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001123_260 0.0776187833 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
12 Hb_007416_340 0.0783074704 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002947_030 0.0783627915 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
14 Hb_000200_380 0.07846047 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
15 Hb_002823_030 0.0786628446 - - -
16 Hb_000484_030 0.0789210263 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
17 Hb_000029_300 0.0799953489 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
18 Hb_000343_250 0.0801194865 - - PREDICTED: protein CASC3 [Jatropha curcas]
19 Hb_002732_040 0.0803196206 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
20 Hb_000281_090 0.0808304259 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]

Gene co-expression network

sample Hb_007943_110 Hb_007943_110 Hb_014361_070 Hb_014361_070 Hb_007943_110--Hb_014361_070 Hb_000060_090 Hb_000060_090 Hb_007943_110--Hb_000060_090 Hb_003371_110 Hb_003371_110 Hb_007943_110--Hb_003371_110 Hb_006882_020 Hb_006882_020 Hb_007943_110--Hb_006882_020 Hb_003029_110 Hb_003029_110 Hb_007943_110--Hb_003029_110 Hb_006909_070 Hb_006909_070 Hb_007943_110--Hb_006909_070 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_014361_070--Hb_003371_110 Hb_007576_110 Hb_007576_110 Hb_014361_070--Hb_007576_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_002823_030 Hb_002823_030 Hb_014361_070--Hb_002823_030 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_013399_100 Hb_013399_100 Hb_000060_090--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000060_090--Hb_001409_020 Hb_000029_300 Hb_000029_300 Hb_000060_090--Hb_000029_300 Hb_105105_020 Hb_105105_020 Hb_000060_090--Hb_105105_020 Hb_008643_210 Hb_008643_210 Hb_000060_090--Hb_008643_210 Hb_010222_050 Hb_010222_050 Hb_000060_090--Hb_010222_050 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_006882_020--Hb_003371_110 Hb_004453_110 Hb_004453_110 Hb_006882_020--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_006882_020--Hb_008112_030 Hb_000429_220 Hb_000429_220 Hb_006882_020--Hb_000429_220 Hb_006882_020--Hb_003029_110 Hb_003029_110--Hb_000166_130 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_003029_110--Hb_010222_050 Hb_003029_110--Hb_003371_110 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_007919_100 Hb_007919_100 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7499 16.5989 9.01882 14.0617 16.9851 18.2397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4758 13.6824 10.8133 9.46738 16.7579

CAGE analysis