Hb_007919_100

Information

Type transcription factor
Description TF Family: SET
Location Contig7919: 65753-76433
Sequence    

Annotation

kegg
ID rcu:RCOM_1602600
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_012073523.1
description PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
swissprot
ID F4K1J4
description Histone-lysine N-methyltransferase ATXR7 OS=Arabidopsis thaliana GN=ATXR7 PE=2 SV=1
trembl
ID A0A067KWV1
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_08001 PE=4 SV=1
Gene Ontology
ID GO:0044424
description set domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58379: 67784-69892 , PASA_asmbl_58380: 66634-69886 , PASA_asmbl_58382: 71263-71636 , PASA_asmbl_58383: 75889-77089 , PASA_asmbl_58384: 75962-77046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_100 0.0 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
2 Hb_032050_040 0.0607994599 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
3 Hb_152202_010 0.066949718 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
4 Hb_002947_030 0.0702769275 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
5 Hb_006909_070 0.0777332241 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002273_120 0.0787388695 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
7 Hb_000300_050 0.0862183124 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000022_020 0.0870149853 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
9 Hb_007943_110 0.0873929517 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
10 Hb_000830_030 0.0878231575 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
11 Hb_001109_060 0.0887801104 - - amino acid transporter, putative [Ricinus communis]
12 Hb_002785_050 0.0892006176 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
13 Hb_003010_020 0.0897570636 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001882_050 0.0904557002 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
15 Hb_000362_150 0.0917331971 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
16 Hb_000181_130 0.0919162171 - - ATP binding protein, putative [Ricinus communis]
17 Hb_012194_050 0.0928366663 - - Aspartyl aminopeptidase, putative [Ricinus communis]
18 Hb_009529_030 0.0931609594 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
19 Hb_033642_030 0.0935254547 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
20 Hb_000346_060 0.0945496778 - - hypothetical protein JCGZ_19590 [Jatropha curcas]

Gene co-expression network

sample Hb_007919_100 Hb_007919_100 Hb_032050_040 Hb_032050_040 Hb_007919_100--Hb_032050_040 Hb_152202_010 Hb_152202_010 Hb_007919_100--Hb_152202_010 Hb_002947_030 Hb_002947_030 Hb_007919_100--Hb_002947_030 Hb_006909_070 Hb_006909_070 Hb_007919_100--Hb_006909_070 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_000300_050 Hb_000300_050 Hb_007919_100--Hb_000300_050 Hb_003010_020 Hb_003010_020 Hb_032050_040--Hb_003010_020 Hb_032050_040--Hb_152202_010 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_000362_150 Hb_000362_150 Hb_152202_010--Hb_000362_150 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210 Hb_007672_060 Hb_007672_060 Hb_002947_030--Hb_007672_060 Hb_033642_030 Hb_033642_030 Hb_002947_030--Hb_033642_030 Hb_019280_030 Hb_019280_030 Hb_002947_030--Hb_019280_030 Hb_007943_110 Hb_007943_110 Hb_002947_030--Hb_007943_110 Hb_007657_010 Hb_007657_010 Hb_002947_030--Hb_007657_010 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_006909_070--Hb_007943_110 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130 Hb_009529_030 Hb_009529_030 Hb_002273_120--Hb_009529_030 Hb_002273_120--Hb_002785_050 Hb_002273_120--Hb_003010_020 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010 Hb_150986_010 Hb_150986_010 Hb_000300_050--Hb_150986_010 Hb_000300_050--Hb_000362_150 Hb_005054_100 Hb_005054_100 Hb_000300_050--Hb_005054_100 Hb_001141_020 Hb_001141_020 Hb_000300_050--Hb_001141_020 Hb_000300_050--Hb_152202_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36037 2.30168 2.00009 3.54436 3.81484 4.58741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99819 2.12108 2.03772 2.17809 4.12445

CAGE analysis