Hb_000300_050

Information

Type -
Description -
Location Contig300: 32159-34998
Sequence    

Annotation

kegg
ID rcu:RCOM_0845230
description hypothetical protein
nr
ID XP_002530952.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O64668
description Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=1 SV=1
trembl
ID B9SY83
description Presenilin OS=Ricinus communis GN=RCOM_0845230 PE=3 SV=1
Gene Ontology
ID GO:0000139
description presenilin-like protein at1g08700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31534: 32244-34291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_150986_010 0.0836290781 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007919_100 0.0862183124 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
4 Hb_000362_150 0.0864335645 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
5 Hb_005054_100 0.086551982 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
6 Hb_001141_020 0.0887550384 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
7 Hb_152202_010 0.0897490542 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
8 Hb_003994_280 0.0915289804 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
9 Hb_032050_040 0.0917535578 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
10 Hb_009467_060 0.0933944704 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
11 Hb_172632_040 0.0935788048 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
12 Hb_000254_090 0.0939674219 - - PREDICTED: la protein 2 [Jatropha curcas]
13 Hb_004225_050 0.0947128444 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
14 Hb_009548_020 0.0953858943 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_002740_180 0.0962846797 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000127_040 0.0971399803 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
17 Hb_054865_150 0.0972815369 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
18 Hb_002716_130 0.0984637742 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
19 Hb_001496_070 0.0990591899 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
20 Hb_000172_290 0.0997450833 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_050 Hb_000300_050 Hb_150986_010 Hb_150986_010 Hb_000300_050--Hb_150986_010 Hb_007919_100 Hb_007919_100 Hb_000300_050--Hb_007919_100 Hb_000362_150 Hb_000362_150 Hb_000300_050--Hb_000362_150 Hb_005054_100 Hb_005054_100 Hb_000300_050--Hb_005054_100 Hb_001141_020 Hb_001141_020 Hb_000300_050--Hb_001141_020 Hb_152202_010 Hb_152202_010 Hb_000300_050--Hb_152202_010 Hb_001454_130 Hb_001454_130 Hb_150986_010--Hb_001454_130 Hb_011930_160 Hb_011930_160 Hb_150986_010--Hb_011930_160 Hb_000789_310 Hb_000789_310 Hb_150986_010--Hb_000789_310 Hb_000120_060 Hb_000120_060 Hb_150986_010--Hb_000120_060 Hb_103012_010 Hb_103012_010 Hb_150986_010--Hb_103012_010 Hb_032050_040 Hb_032050_040 Hb_007919_100--Hb_032050_040 Hb_007919_100--Hb_152202_010 Hb_002947_030 Hb_002947_030 Hb_007919_100--Hb_002947_030 Hb_006909_070 Hb_006909_070 Hb_007919_100--Hb_006909_070 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_009529_030 Hb_009529_030 Hb_000362_150--Hb_009529_030 Hb_001496_070 Hb_001496_070 Hb_000362_150--Hb_001496_070 Hb_000362_150--Hb_152202_010 Hb_000004_030 Hb_000004_030 Hb_000362_150--Hb_000004_030 Hb_000362_150--Hb_032050_040 Hb_002493_020 Hb_002493_020 Hb_000362_150--Hb_002493_020 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_000169_090 Hb_000169_090 Hb_005054_100--Hb_000169_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060 Hb_009467_060 Hb_009467_060 Hb_001141_020--Hb_009467_060 Hb_188063_020 Hb_188063_020 Hb_001141_020--Hb_188063_020 Hb_003025_110 Hb_003025_110 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_009548_020 Hb_009548_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_152202_010--Hb_032050_040 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09243 3.82823 2.85437 7.08146 7.79457 8.81394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.08686 3.48966 6.96091 4.75431 7.95184

CAGE analysis