Hb_002811_060

Information

Type -
Description -
Location Contig2811: 55240-69257
Sequence    

Annotation

kegg
ID rcu:RCOM_1428540
description Protein transport protein Sec24C, putative
nr
ID XP_012089212.1
description PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
swissprot
ID Q9M291
description Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=2 SV=3
trembl
ID A0A067JIB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23460 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like at4g32640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29393: 66367-67743 , PASA_asmbl_29394: 68039-69468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_060 0.0 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
2 Hb_012022_090 0.0511888186 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
3 Hb_005054_100 0.0523998041 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
4 Hb_000116_500 0.061074725 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
5 Hb_003988_010 0.0629751799 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
6 Hb_000608_320 0.0722942375 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
7 Hb_006660_010 0.0768390821 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
8 Hb_007803_050 0.0779839402 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
9 Hb_004306_080 0.0797360843 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
10 Hb_001143_160 0.0802462409 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
11 Hb_010417_050 0.0815277038 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
12 Hb_002740_180 0.0816290701 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005065_010 0.083096698 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
14 Hb_001199_100 0.0833526199 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
15 Hb_000213_010 0.0833881516 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
16 Hb_002027_290 0.0846598467 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
17 Hb_123903_010 0.0853273604 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
18 Hb_003253_040 0.0867269029 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_004102_140 0.0874293272 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005211_100 0.0876248827 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]

Gene co-expression network

sample Hb_002811_060 Hb_002811_060 Hb_012022_090 Hb_012022_090 Hb_002811_060--Hb_012022_090 Hb_005054_100 Hb_005054_100 Hb_002811_060--Hb_005054_100 Hb_000116_500 Hb_000116_500 Hb_002811_060--Hb_000116_500 Hb_003988_010 Hb_003988_010 Hb_002811_060--Hb_003988_010 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_012022_090--Hb_000116_500 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_005054_100--Hb_012022_090 Hb_000169_090 Hb_000169_090 Hb_005054_100--Hb_000169_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_010417_050 Hb_010417_050 Hb_003988_010--Hb_010417_050 Hb_003988_010--Hb_000116_500 Hb_003605_110 Hb_003605_110 Hb_003988_010--Hb_003605_110 Hb_004228_010 Hb_004228_010 Hb_003988_010--Hb_004228_010 Hb_002053_080 Hb_002053_080 Hb_003988_010--Hb_002053_080 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_000318_290 Hb_000318_290 Hb_000608_320--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_000608_320--Hb_005170_040 Hb_003777_310 Hb_003777_310 Hb_000608_320--Hb_003777_310 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_007803_050 Hb_007803_050 Hb_006660_010--Hb_007803_050 Hb_011310_160 Hb_011310_160 Hb_006660_010--Hb_011310_160 Hb_000212_310 Hb_000212_310 Hb_006660_010--Hb_000212_310 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_000592_030 Hb_000592_030 Hb_006660_010--Hb_000592_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6623 8.5669 5.31782 13.1373 16.717 18.481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.34881 7.24193 16.6286 12.638 9.94822

CAGE analysis