Hb_001143_160

Information

Type -
Description -
Location Contig1143: 150420-162063
Sequence    

Annotation

kegg
ID rcu:RCOM_0563830
description ubiquitin specific protease, putative (EC:3.1.2.15)
nr
ID XP_012087824.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
swissprot
ID Q9SCJ9
description Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=3
trembl
ID A0A067JX40
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_26566 PE=3 SV=1
Gene Ontology
ID GO:0004843
description ubiquitin carboxyl-terminal hydrolase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04339: 150495-154352 , PASA_asmbl_04340: 154424-161860 , PASA_asmbl_04341: 154424-157807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_160 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
2 Hb_123352_020 0.0398781146 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
3 Hb_000123_210 0.0560094565 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
4 Hb_007163_090 0.0632882492 - - PREDICTED: protein spt2-like [Jatropha curcas]
5 Hb_000225_040 0.0655238956 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_001493_030 0.0655902197 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
7 Hb_000011_200 0.0660704568 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
8 Hb_012022_090 0.0665576269 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
9 Hb_002025_020 0.0682872804 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
10 Hb_006827_020 0.0693006165 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000193_190 0.0711125073 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
12 Hb_000808_270 0.0717710119 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
13 Hb_000676_110 0.0731725873 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
14 Hb_007576_110 0.0751178559 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
15 Hb_010618_010 0.0752277706 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_001341_170 0.0753978618 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
17 Hb_002835_370 0.0757738636 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
18 Hb_005065_010 0.0758958215 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
19 Hb_143629_210 0.0762193255 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
20 Hb_000318_510 0.0768177177 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_160 Hb_001143_160 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_007163_090 Hb_007163_090 Hb_001143_160--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_123352_020--Hb_007163_090 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_000123_210--Hb_000011_200 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_000123_210--Hb_123352_020 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_000011_200--Hb_003158_010 Hb_000011_200--Hb_006827_020 Hb_000011_200--Hb_007317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.902 15.5479 8.48705 13.6043 22.1461 24.9596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9336 13.1772 21.4873 18.7755 9.25315

CAGE analysis