Hb_000700_140

Information

Type -
Description -
Location Contig700: 216857-220663
Sequence    

Annotation

kegg
ID rcu:RCOM_1721220
description GTP-binding protein-plant, putative
nr
ID XP_012085132.1
description PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
swissprot
ID Q9M8Z5
description Guanine nucleotide-binding protein-like NSN1 OS=Arabidopsis thaliana GN=NSN1 PE=2 SV=1
trembl
ID A0A067JR15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17559 PE=4 SV=1
Gene Ontology
ID GO:0005730
description guanine nucleotide-binding nsn1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54803: 217086-220441 , PASA_asmbl_54804: 220472-220921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_140 0.0 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
2 Hb_001493_030 0.0548180974 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
3 Hb_030116_020 0.0728966795 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
4 Hb_143629_110 0.0756101684 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
5 Hb_000123_210 0.0776341408 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
6 Hb_000367_010 0.0781763792 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
7 Hb_106371_010 0.0790736839 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_001143_160 0.0794039508 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
9 Hb_006827_020 0.0798933724 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000390_320 0.0801683802 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_007317_110 0.0810081244 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
12 Hb_001960_020 0.0812781534 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
13 Hb_003090_080 0.0820683076 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
14 Hb_002078_020 0.0823486255 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
15 Hb_002783_240 0.0827586172 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
16 Hb_001140_350 0.0828065929 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
17 Hb_123903_010 0.0855335645 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
18 Hb_000160_040 0.0864218932 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
19 Hb_000345_240 0.0870680689 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
20 Hb_009627_010 0.088210892 - - Protein dom-3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000700_140 Hb_000700_140 Hb_001493_030 Hb_001493_030 Hb_000700_140--Hb_001493_030 Hb_030116_020 Hb_030116_020 Hb_000700_140--Hb_030116_020 Hb_143629_110 Hb_143629_110 Hb_000700_140--Hb_143629_110 Hb_000123_210 Hb_000123_210 Hb_000700_140--Hb_000123_210 Hb_000367_010 Hb_000367_010 Hb_000700_140--Hb_000367_010 Hb_106371_010 Hb_106371_010 Hb_000700_140--Hb_106371_010 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030 Hb_003747_010 Hb_003747_010 Hb_030116_020--Hb_003747_010 Hb_001172_010 Hb_001172_010 Hb_030116_020--Hb_001172_010 Hb_030116_020--Hb_000123_210 Hb_033834_060 Hb_033834_060 Hb_030116_020--Hb_033834_060 Hb_030116_020--Hb_106371_010 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020 Hb_000983_150 Hb_000983_150 Hb_000367_010--Hb_000983_150 Hb_007904_160 Hb_007904_160 Hb_000367_010--Hb_007904_160 Hb_003680_150 Hb_003680_150 Hb_000367_010--Hb_003680_150 Hb_023480_010 Hb_023480_010 Hb_000367_010--Hb_023480_010 Hb_000367_010--Hb_001617_060 Hb_003090_080 Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_000160_040 Hb_000160_040 Hb_106371_010--Hb_000160_040 Hb_001790_020 Hb_001790_020 Hb_106371_010--Hb_001790_020 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6999 10.0388 8.90385 11.2008 22.1132 18.6368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67964 11.13 13.4942 18.0604 7.16123

CAGE analysis