Hb_001172_010

Information

Type -
Description -
Location Contig1172: 39846-45228
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17740g
description POPTRDRAFT_247393; hypothetical protein
nr
ID XP_012083779.1
description PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
swissprot
ID Q944A7
description Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1
trembl
ID A0A067KAS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14695 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at4g35230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05328: 39621-45217
cDNA
(Sanger)
(ID:Location)		 001_L06.ab1: 44314-45217 , 020_N19.ab1: 44315-45219

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_010 0.0 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
2 Hb_009627_010 0.0607542445 - - Protein dom-3, putative [Ricinus communis]
3 Hb_002304_090 0.0612167015 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
4 Hb_004429_100 0.0659151801 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
5 Hb_033834_060 0.0666679936 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
6 Hb_007520_030 0.0709061407 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
7 Hb_000160_040 0.0713814021 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
8 Hb_000300_440 0.0723588583 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
9 Hb_030116_020 0.0725181938 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
10 Hb_000538_100 0.0793131636 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000523_050 0.0814672952 - - microsomal glutathione s-transferase, putative [Ricinus communis]
12 Hb_003747_010 0.0814787627 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
13 Hb_004689_050 0.0818682087 - - conserved hypothetical protein [Ricinus communis]
14 Hb_106371_010 0.0819088771 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_007188_070 0.083097729 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
16 Hb_006586_050 0.0847521374 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
17 Hb_000923_080 0.0851369014 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
18 Hb_010381_060 0.0854311838 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
19 Hb_000768_110 0.085972947 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
20 Hb_003464_020 0.0860583425 - - srpk, putative [Ricinus communis]

Gene co-expression network

sample Hb_001172_010 Hb_001172_010 Hb_009627_010 Hb_009627_010 Hb_001172_010--Hb_009627_010 Hb_002304_090 Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_001172_010--Hb_033834_060 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_009627_010--Hb_002304_090 Hb_009627_010--Hb_033834_060 Hb_000538_100 Hb_000538_100 Hb_002304_090--Hb_000538_100 Hb_007188_070 Hb_007188_070 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_004689_050 Hb_004689_050 Hb_004429_100--Hb_004689_050 Hb_004429_100--Hb_033834_060 Hb_000271_090 Hb_000271_090 Hb_004429_100--Hb_000271_090 Hb_006157_020 Hb_006157_020 Hb_004429_100--Hb_006157_020 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_033834_060--Hb_004689_050 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_002783_310 Hb_002783_310 Hb_007520_030--Hb_002783_310 Hb_000059_140 Hb_000059_140 Hb_007520_030--Hb_000059_140 Hb_008406_110 Hb_008406_110 Hb_007520_030--Hb_008406_110 Hb_000771_180 Hb_000771_180 Hb_007520_030--Hb_000771_180 Hb_001502_060 Hb_001502_060 Hb_007520_030--Hb_001502_060 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000173_510 Hb_000173_510 Hb_000160_040--Hb_000173_510 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4531 12.4336 9.59202 9.20664 23.0894 22.9457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2684 7.54351 11.9765 18.3967 6.07769

CAGE analysis