Hb_008406_110

Information

Type -
Description -
Location Contig8406: 74698-81504
Sequence    

Annotation

kegg
ID tcc:TCM_008152
description Ring 1b
nr
ID XP_012088244.1
description PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
swissprot
ID Q9FKW0
description Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2
trembl
ID A0A067JMQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25760 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60112: 74692-81250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_110 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
2 Hb_001390_110 0.0588015077 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
3 Hb_000926_190 0.0630209206 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_005276_210 0.0663606534 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
5 Hb_000334_270 0.0669761116 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_003849_250 0.0680606832 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
7 Hb_007520_030 0.0697855825 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
8 Hb_000794_050 0.0711185746 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
9 Hb_000034_100 0.073614732 - - dnajc14 protein, putative [Ricinus communis]
10 Hb_000116_180 0.0744514028 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
11 Hb_000390_180 0.0759145452 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
12 Hb_006620_020 0.076379685 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
13 Hb_001579_320 0.0771190763 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
14 Hb_000487_110 0.0771324794 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
15 Hb_001486_340 0.0779358541 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
16 Hb_000174_110 0.0779992678 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
17 Hb_003952_070 0.0780047533 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000853_230 0.0798185257 - - syntaxin, putative [Ricinus communis]
19 Hb_054865_100 0.0800028128 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
20 Hb_003029_030 0.0801501371 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008406_110 Hb_008406_110 Hb_001390_110 Hb_001390_110 Hb_008406_110--Hb_001390_110 Hb_000926_190 Hb_000926_190 Hb_008406_110--Hb_000926_190 Hb_005276_210 Hb_005276_210 Hb_008406_110--Hb_005276_210 Hb_000334_270 Hb_000334_270 Hb_008406_110--Hb_000334_270 Hb_003849_250 Hb_003849_250 Hb_008406_110--Hb_003849_250 Hb_007520_030 Hb_007520_030 Hb_008406_110--Hb_007520_030 Hb_001936_060 Hb_001936_060 Hb_001390_110--Hb_001936_060 Hb_000390_180 Hb_000390_180 Hb_001390_110--Hb_000390_180 Hb_000853_230 Hb_000853_230 Hb_001390_110--Hb_000853_230 Hb_001390_110--Hb_000926_190 Hb_000794_050 Hb_000794_050 Hb_001390_110--Hb_000794_050 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000926_190--Hb_000334_270 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000116_180 Hb_000116_180 Hb_003849_250--Hb_000116_180 Hb_003849_250--Hb_000334_270 Hb_000866_470 Hb_000866_470 Hb_003849_250--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160 Hb_002783_310 Hb_002783_310 Hb_007520_030--Hb_002783_310 Hb_000059_140 Hb_000059_140 Hb_007520_030--Hb_000059_140 Hb_001172_010 Hb_001172_010 Hb_007520_030--Hb_001172_010 Hb_000771_180 Hb_000771_180 Hb_007520_030--Hb_000771_180 Hb_001502_060 Hb_001502_060 Hb_007520_030--Hb_001502_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6285 8.93548 7.14927 4.68565 16.5274 12.3071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0851 9.11131 5.76097 8.24334 6.68156

CAGE analysis