Hb_003849_250

Information

Type -
Description -
Location Contig3849: 190224-193883
Sequence    

Annotation

kegg
ID rcu:RCOM_1797950
description maintenance of killer 16 (mak16) protein, putative
nr
ID XP_012085486.1
description PREDICTED: protein MAK16 homolog [Jatropha curcas]
swissprot
ID Q66L33
description Protein MAK16 homolog A OS=Xenopus laevis GN=mak16-a PE=2 SV=1
trembl
ID A0A067JRZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38784: 190071-190684 , PASA_asmbl_38785: 191206-193742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_250 0.0 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
2 Hb_008406_110 0.0680606832 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
3 Hb_000116_180 0.0702690499 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
4 Hb_000334_270 0.0727536671 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_000866_470 0.0749046055 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
6 Hb_000358_250 0.0828042504 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
7 Hb_001828_160 0.0848785883 - - hypothetical protein F775_31105 [Aegilops tauschii]
8 Hb_005276_210 0.0876355733 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
9 Hb_010068_040 0.0888485978 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
10 Hb_000926_190 0.0888614613 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
11 Hb_028900_010 0.089295252 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
12 Hb_002367_130 0.0911814808 - - UNC-50 family protein isoform 1 [Theobroma cacao]
13 Hb_000913_050 0.0913217848 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
14 Hb_000174_110 0.0922876237 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
15 Hb_001586_040 0.0957482229 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
16 Hb_000059_140 0.0969717509 - - rnase h, putative [Ricinus communis]
17 Hb_005618_160 0.0972974846 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
18 Hb_003849_060 0.0981951581 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
19 Hb_011609_050 0.0983306741 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
20 Hb_000794_050 0.0989660124 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_250 Hb_003849_250 Hb_008406_110 Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_000116_180 Hb_000116_180 Hb_003849_250--Hb_000116_180 Hb_000334_270 Hb_000334_270 Hb_003849_250--Hb_000334_270 Hb_000866_470 Hb_000866_470 Hb_003849_250--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160 Hb_001390_110 Hb_001390_110 Hb_008406_110--Hb_001390_110 Hb_000926_190 Hb_000926_190 Hb_008406_110--Hb_000926_190 Hb_005276_210 Hb_005276_210 Hb_008406_110--Hb_005276_210 Hb_008406_110--Hb_000334_270 Hb_007520_030 Hb_007520_030 Hb_008406_110--Hb_007520_030 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000116_180--Hb_000926_190 Hb_000116_180--Hb_000866_470 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000866_470--Hb_000913_050 Hb_030131_040 Hb_030131_040 Hb_000866_470--Hb_030131_040 Hb_000085_150 Hb_000085_150 Hb_000866_470--Hb_000085_150 Hb_001300_070 Hb_001300_070 Hb_000866_470--Hb_001300_070 Hb_002477_130 Hb_002477_130 Hb_000358_250--Hb_002477_130 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_000429_200 Hb_000429_200 Hb_000358_250--Hb_000429_200 Hb_001828_160--Hb_000207_310 Hb_001828_160--Hb_000913_050 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3591 14.8292 11.7071 8.35093 33.8211 22.1323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5615 19.2475 6.6015 12.1592 12.9174

CAGE analysis