Hb_000085_150

Information

Type -
Description -
Location Contig85: 102312-106530
Sequence    

Annotation

kegg
ID rcu:RCOM_0546910
description Lipopolysaccharide-binding protein precursor, putative
nr
ID XP_012070922.1
description PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
swissprot
ID Q9MAU5
description Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1
trembl
ID A0A067L574
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00961 PE=4 SV=1
Gene Ontology
ID GO:0008289
description bpi lbp family protein at1g04970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60340: 102588-104701 , PASA_asmbl_60341: 105366-106216 , PASA_asmbl_60345: 106591-113820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_150 0.0 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
2 Hb_001195_560 0.0748732597 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
3 Hb_003371_110 0.0759918237 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
4 Hb_010222_050 0.0768250837 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
5 Hb_002823_030 0.07771112 - - -
6 Hb_000866_470 0.0786989089 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
7 Hb_030131_040 0.0822056813 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
8 Hb_004881_020 0.0837076234 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
9 Hb_144166_010 0.0837679577 - - PREDICTED: importin-13 [Jatropha curcas]
10 Hb_000212_240 0.0842858771 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_006882_020 0.084319994 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003018_130 0.0847769769 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
13 Hb_033720_010 0.085110551 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
14 Hb_000526_050 0.0852874574 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
15 Hb_007426_150 0.0873821274 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
16 Hb_006252_040 0.0889768646 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
17 Hb_004128_050 0.0890425094 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_003952_070 0.0899794957 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000190_120 0.090160481 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
20 Hb_014361_070 0.090705127 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_000085_150 Hb_000085_150 Hb_001195_560 Hb_001195_560 Hb_000085_150--Hb_001195_560 Hb_003371_110 Hb_003371_110 Hb_000085_150--Hb_003371_110 Hb_010222_050 Hb_010222_050 Hb_000085_150--Hb_010222_050 Hb_002823_030 Hb_002823_030 Hb_000085_150--Hb_002823_030 Hb_000866_470 Hb_000866_470 Hb_000085_150--Hb_000866_470 Hb_030131_040 Hb_030131_040 Hb_000085_150--Hb_030131_040 Hb_007426_150 Hb_007426_150 Hb_001195_560--Hb_007426_150 Hb_003018_130 Hb_003018_130 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_001195_560--Hb_002823_030 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_005731_030 Hb_005731_030 Hb_010222_050--Hb_005731_030 Hb_003029_110 Hb_003029_110 Hb_010222_050--Hb_003029_110 Hb_000060_090 Hb_000060_090 Hb_010222_050--Hb_000060_090 Hb_000152_380 Hb_000152_380 Hb_010222_050--Hb_000152_380 Hb_000502_050 Hb_000502_050 Hb_010222_050--Hb_000502_050 Hb_010222_050--Hb_002823_030 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_002823_030--Hb_000190_120 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_002823_030--Hb_014361_070 Hb_002823_030--Hb_003018_130 Hb_000116_180 Hb_000116_180 Hb_000866_470--Hb_000116_180 Hb_003849_250 Hb_003849_250 Hb_000866_470--Hb_003849_250 Hb_000913_050 Hb_000913_050 Hb_000866_470--Hb_000913_050 Hb_000866_470--Hb_030131_040 Hb_001300_070 Hb_001300_070 Hb_000866_470--Hb_001300_070 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78868 3.29388 2.26096 2.85562 4.92682 5.62311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03254 2.75464 1.841 1.85019 2.50641

CAGE analysis